View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8826_low_4 (Length: 352)
Name: NF8826_low_4
Description: NF8826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8826_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 6252082 - 6252408
Alignment:
| Q |
16 |
atcagcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6252082 |
atcagcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcga |
6252181 |
T |
|
| Q |
116 |
ggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgc |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6252182 |
ggggttggtcatgaagagagtttccagtgttgttgagttaatgcaacttcttccacagttacgagatcctcagagtgagcatcttctacttcgatcatgc |
6252281 |
T |
|
| Q |
216 |
atgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6252282 |
atgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcgattgtgttgtttgataaagagttgtgtggagtggttg |
6252381 |
T |
|
| Q |
316 |
aggatattgtggtttattgatgtccat |
342 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
6252382 |
aggatattgtggtttattgaggtccat |
6252408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 6172738 - 6173064
Alignment:
| Q |
16 |
atcagcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6172738 |
atcagcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcga |
6172837 |
T |
|
| Q |
116 |
ggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgc |
215 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6172838 |
gaggttggtcatgaagagagtttccagtgttgttgagttaatgcaccttcttccacagttacgagatcctcagagtgagcatcttctacttcgatcatgc |
6172937 |
T |
|
| Q |
216 |
atgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttg |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6172938 |
atgggtatcgccaaaattttcgttgacctaagaacgtgccaaccaattcacatggaggaggtggttgtgttgtttgataaagagttgtgtggagcggttg |
6173037 |
T |
|
| Q |
316 |
aggatattgtggtttattgatgtccat |
342 |
Q |
| |
|
||||||||||||||||| || |||||| |
|
|
| T |
6173038 |
aggatattgtggtttatggaggtccat |
6173064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 49019061 - 49018903
Alignment:
| Q |
171 |
cagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatgg |
270 |
Q |
| |
|
|||||||||| |||| | ||| || |||| |||||||||| || || ||||| |||||| ||||||||| | ||| | || || ||||||||||||| |
|
|
| T |
49019061 |
cagttacgagctcctcatagttagtctcttttacttcgatcgtgtataggtattgccaaacttttctttggctgaaggatatgtcagccgattcacatgg |
49018962 |
T |
|
| Q |
271 |
aggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
||||||| | | ||||||||||||||||| | ||||||| ||||||||| ||||||||| |
|
|
| T |
49018961 |
aggaggcagctatgttgtttgataaagagctatgtggaggggttgaggacattgtggtt |
49018903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 434558 - 434244
Alignment:
| Q |
16 |
atcagcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaa |
115 |
Q |
| |
|
|||| ||||||||||| || |||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| | ||||| ||||||||| | |
|
|
| T |
434558 |
atcaacatcgcgagggtttgttccctgtggatattaggaggccgacattgggggtgaaattgcttggaggggttgttagccgcgataaaggttttatcga |
434459 |
T |
|
| Q |
116 |
ggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgc |
215 |
Q |
| |
|
|||||||| ||| ||||||| ||| || ||||||||||||||||| |||||||||| ||||||||||||| || ||||| | ||||||||||||||||| |
|
|
| T |
434458 |
ggggttggccataaagagagcttccagagttgttgagttaatgcaccttcttccacggttacgagatcctcagcgtgagatttttctacttcgatcatgc |
434359 |
T |
|
| Q |
216 |
atgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttg |
315 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| |||| || |||||| |||||||||||||| || | ||||||| ||||||||||||||||||| |||| |
|
|
| T |
434358 |
atgggtatcaccaaacttttctttggcctatgaacctgtcaaccggttcacatggaggagacgactatgttgttcgataaagagttgtgtggagcagttg |
434259 |
T |
|
| Q |
316 |
aggatattgtggttt |
330 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
434258 |
aggatattgtggttt |
434244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 125 - 325
Target Start/End: Original strand, 6821118 - 6821318
Alignment:
| Q |
125 |
catgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatc |
224 |
Q |
| |
|
||||||||||| || || |||||||||||| |||| ||||||||||| || ||||| || | | ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
6821118 |
catgaagagagctttcagggttgttgagttagtgcatcttcttccacaactaagagattctcatactgagcttcttctacttcgatcatacatgggtatc |
6821217 |
T |
|
| Q |
225 |
gccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattg |
324 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||| ||||||||||| || ||| | ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6821218 |
accaaagttttctttggcctaaggatgtgccaaccaattcacatggaagaagcgactatgttgttcgataaagagttgtgtggagtggttgaggatattg |
6821317 |
T |
|
| Q |
325 |
t |
325 |
Q |
| |
|
| |
|
|
| T |
6821318 |
t |
6821318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 10404738 - 10404425
Alignment:
| Q |
16 |
atcagcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaa |
115 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||||||||||| |||||||| ||||||| |||||||| |||||||| |||||| ||||||||| | |
|
|
| T |
10404738 |
atcagcatcgcgagggcttgttccctgtggatattgggaggccgacattgggg-tgaaatttcttggagggattgttagccaagataaaggttttatcga |
10404640 |
T |
|
| Q |
116 |
ggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgc |
215 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10404639 |
ggggttgaccatgaagagagcttccagggttgttgagttaatgctccttctttcatagttacgagatccttagagtgagcttcttctacttcgatcatgc |
10404540 |
T |
|
| Q |
216 |
atgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttg |
315 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||| ||||||||| |||||||||||| ||| | | ||||||||||||| ||| | |||||| ||||| |
|
|
| T |
10404539 |
atgggtattgccaaaattttctttggcataagaatgtgccaaccaattcacatggagaaggtgactatgttgtttgataatgagcttcgtggagcggttg |
10404440 |
T |
|
| Q |
316 |
aggatattgtggttt |
330 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10404439 |
aggatattgtggttt |
10404425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 329
Target Start/End: Original strand, 29336936 - 29337234
Alignment:
| Q |
33 |
tttttccctatggatattgggaggccgt-cattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaag |
131 |
Q |
| |
|
||||||| | ||||||||||||||| | |||| ||||| |||||| | ||| |||||||||| |||||| |||||||| ||||| | | ||||||| |
|
|
| T |
29336936 |
tttttccttttggatattgggaggcgggacattaggggtaaaattgctcggaagggttgttagtcgagatacatgttttatcgaggggcttgccatgaag |
29337035 |
T |
|
| Q |
132 |
agagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaa |
231 |
Q |
| |
|
||| || | | | |||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
29337036 |
agaactttaaaggctactgagttaatgcatcttcttccacagttatgagatcctcagagtgagcttcttctacttcaatcgtgcaagggtatcgccaaag |
29337135 |
T |
|
| Q |
232 |
ttttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtg-ttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||||||||| |||| | || || ||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
29337136 |
ttttctttggcctaaggacgtgccagccgattcacatggaggaagcggctatgtttttttgataaagagttgcgtggagtggttgaggacattgtggtt |
29337234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 32116659 - 32116582
Alignment:
| Q |
252 |
tgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
32116659 |
tgccaaccgattcacatggaggaggcgactatgttgtttgataaagagttgggtggagcggttgaggacattgtggtt |
32116582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 329
Target Start/End: Complemental strand, 32120958 - 32120878
Alignment:
| Q |
249 |
acgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
||||| |||||||||||||||||||||| || | ||||||||||||||||| || |||||||| ||||||| | ||||||| |
|
|
| T |
32120958 |
acgtgtcaaccgattcacatggaggaggtggctatgttgtttgataaagagctgcgtggagtgattgaggacaatgtggtt |
32120878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 304
Target Start/End: Original strand, 26224785 - 26224927
Alignment:
| Q |
162 |
cttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccga |
261 |
Q |
| |
|
||||||| ||| ||| || ||||| | | ||||| |||||| | | ||| |||||||| |||||||||| |||| ||| | | || | ||||||||||| |
|
|
| T |
26224785 |
cttcttctacaattaagaaatcctaataatgagcttcttctgcgttgattatgcatggatatcgccaaacttttatttttcttgaggatgtgccaaccga |
26224884 |
T |
|
| Q |
262 |
ttcacatggaggaggcggttgtgttgtttgataaagagttgtg |
304 |
Q |
| |
|
| ||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
26224885 |
tgcacatggaggaggcgtctatgttgtttgacaaagagttgtg |
26224927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 44 - 327
Target Start/End: Original strand, 9684306 - 9684589
Alignment:
| Q |
44 |
ggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagt |
143 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| | || |||| ||||||| ||||||| ||||||||| ||||||||| ||||||||||| || || |
|
|
| T |
9684306 |
ggatattgggaggccgacgttgggggtgaaattgctcggtggggctgttagccgagataaaggttttatcgaggggttggccatgaagagagctttcagg |
9684405 |
T |
|
| Q |
144 |
gttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacc |
243 |
Q |
| |
|
| || |||||||||||| |||||||| || ||||| |||||| ||||||||| ||||||||||||| | ||||||||||| ||| || ||||||||| | |
|
|
| T |
9684406 |
gctgctgagttaatgcatcttcttcctcacttacgggatcctcagagtgagcttcttctacttcgaacgtgcatgggtattgcccaacttttctttggct |
9684505 |
T |
|
| Q |
244 |
taagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtgg |
327 |
Q |
| |
|
|||| || || ||||| ||||||||||||||||||| | ||||||||||||||||| || ||| || ||||||||| ||||||| |
|
|
| T |
9684506 |
taaggacatgtcaaccaattcacatggaggaggcggctatgttgtttgataaagagctgcgtgaagcggttgaggacattgtgg |
9684589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 328
Target Start/End: Complemental strand, 8589275 - 8589017
Alignment:
| Q |
63 |
ttgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaac |
162 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||| || ||||||| | | ||||||||||||||| |
|
|
| T |
8589275 |
ttgggggtgaaattgcttggaggggttgttagccgaggtagatgttttatcaaggggttggccacgaagaga---tgaa----tgttgagttaatgcata |
8589183 |
T |
|
| Q |
163 |
ttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgat |
262 |
Q |
| |
|
|||||||||| ||| | |||||| |||||| | || ||||||||||||||||||||| ||||| ||| ||||||||| |||||| | |||||||| ||| |
|
|
| T |
8589182 |
ttcttccacaattaagggatcctccgagtgaacttcctctacttcgatcatgcatgggaatcgctaaacttttctttggcctaaggatgtgccaactgat |
8589083 |
T |
|
| Q |
263 |
tcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggt |
328 |
Q |
| |
|
||||||||| || ||| | |||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
8589082 |
tcacatggatgaagcgactatgttgtttgataaagagttgcgtggatcggtcaaggatattgtggt |
8589017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 19036686 - 19036376
Alignment:
| Q |
19 |
agcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggg |
118 |
Q |
| |
|
||||||| | |||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
19036686 |
agcatcgtggggggttgttccctgcggatattgggaggccaacattgggggtgaaattgcttggaggggttgttagtcgagataaaagttttattgaggg |
19036587 |
T |
|
| Q |
119 |
gttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatg |
218 |
Q |
| |
|
||||| ||||||||||| ||| || | || |||||||||||| |||||||| |||||||| |||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
19036586 |
gttggccatgaagagagcttccagggctgctgagttaatgcatcttcttcctcagttacgggatcctcagagtgagcttcttctacttcgattgtgcatg |
19036487 |
T |
|
| Q |
219 |
ggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgagg |
318 |
Q |
| |
|
||||| |||||| ||| | || | |||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| ||| || |||||||| |
|
|
| T |
19036486 |
ggtattgccaaatatttatctggcttaaggacgtgccagttgattcacatggaggaggcgaccatgttgttttataaagagttgcgtgaagcggttgagg |
19036387 |
T |
|
| Q |
319 |
atattgtggtt |
329 |
Q |
| |
|
| ||||||||| |
|
|
| T |
19036386 |
acattgtggtt |
19036376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 329
Target Start/End: Original strand, 28040022 - 28040283
Alignment:
| Q |
67 |
gggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttct |
166 |
Q |
| |
|
||||||||||| | ||||||| | |||| ||||||| |||||||| ||||||| | ||||||||||| || || | || | | ||||| || ||||| |
|
|
| T |
28040022 |
gggtgaaattgctcggaggggcttttagacgagataaaggttttattgaggggttagccatgaagagagcttacagggctgctaa-ttaatacatcttct |
28040120 |
T |
|
| Q |
167 |
tccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcac |
266 |
Q |
| |
|
||| |||||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| ||||| ||||||||| | |||| |||||||||||||||||| |
|
|
| T |
28040121 |
tcctcagttacggaatcctcagagttagcttcttctacttcgatcgtgcatgggtattgccaatcttttctttggcttaaggacgtgccaaccgattcac |
28040220 |
T |
|
| Q |
267 |
atggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||||||||| || | || ||||||||||| ||||| ||| || ||||||||| ||||||||| |
|
|
| T |
28040221 |
atggaggaggtggctatggtgtttgataaaaagttgcgtgaagcggttgaggacattgtggtt |
28040283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 316
Target Start/End: Original strand, 32499802 - 32500051
Alignment:
| Q |
66 |
ggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttc |
165 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||| ||||||||| ||||||| | || ||| |||| |||||| ||||||||||||||||| ||| |
|
|
| T |
32499802 |
ggggtgaaattgtttggagggat-gttagccgagatagaggttttatcgaggggttagccaggaatagagcttctagagttgttgagttaatgcattttc |
32499900 |
T |
|
| Q |
166 |
ttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattca |
265 |
Q |
| |
|
||||| | ||| |||||| || | |||| |||||||||||||||||||||||||||||||||| ||| ||||||||| || || ||| |||| ||||| |
|
|
| T |
32499901 |
ttccataattaagagatctctaaaatgagtttcttctacttcgatcatgcatgggtatcgccaaactttcctttgacctgaggacatgctaaccaattca |
32500000 |
T |
|
| Q |
266 |
catggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttga |
316 |
Q |
| |
|
|||||||| | || ||||| |||||||| |||||||| ||| |||||| |
|
|
| T |
32500001 |
tgtggaggagatgattatgttgcttgataaaaagttgtgtagagcggttga |
32500051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 163 - 329
Target Start/End: Original strand, 7793907 - 7794073
Alignment:
| Q |
163 |
ttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgat |
262 |
Q |
| |
|
|||||||||| |||||||||| | | | ||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||| ||||||||||| || |
|
|
| T |
7793907 |
ttcttccacaattacgagatcgtcataatgagcttcttctacttcgatcatgtttgggtatcaccaaaattttctttggcctaaggacgtgccaaccaat |
7794006 |
T |
|
| Q |
263 |
tcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||| ||| ||||||| |||||||| |||||||| |
|
|
| T |
7794007 |
tcacatggaggaggcgactatgttatttgataaagaattgggtggagtagttgaggacgttgtggtt |
7794073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 329
Target Start/End: Complemental strand, 37201385 - 37201205
Alignment:
| Q |
149 |
tgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaaga |
248 |
Q |
| |
|
|||||||||| | ||||||| ||| |||| ||||||| | ||||| | | || |||||| | ||| |||||||||| ||||| ||||||| |||||||| |
|
|
| T |
37201385 |
tgagttaatgtatcttcttctacacttacaagatcctcaaagtgaacttattttacttcaagcatacatgggtatcaccaaatttttcttagacctaagg |
37201286 |
T |
|
| Q |
249 |
acgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|| |||||| |||||||||| | |||||| | || ||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37201285 |
acatgccaattgattcacatgaaagaggcgactatgatgtttgataaagagttgcgtggagcggttgaggacattgtggtt |
37201205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 329
Target Start/End: Complemental strand, 18282319 - 18282192
Alignment:
| Q |
202 |
tacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagtt |
301 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| | |||||| || |||||||| |||||||||| ||||| || | ||||||||||| ||||||| |
|
|
| T |
18282319 |
tacttcgatcatgcatgggtattgccaaacttttcttcggcctaaggacatgccaaccaattcacatggtggaggtggctatgttgtttgatcaagagtt |
18282220 |
T |
|
| Q |
302 |
gtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||||| |||||||| |||| |||| |
|
|
| T |
18282219 |
ccgtggagcagttgaggacattgcggtt |
18282192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 15586056 - 15585899
Alignment:
| Q |
67 |
gggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttct |
166 |
Q |
| |
|
|||||||||| ||| |||||| ||| | ||||||| ||||||||| || ||||| |||||||||||| | | ||||||||||||||||| ||||| |
|
|
| T |
15586056 |
gggtgaaattttttagaggggcggttggtcgagataaaggttttatcgagtggttgaatatgaagagagttgttggagttgttgagttaatgcatcttct |
15585957 |
T |
|
| Q |
167 |
tccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatc |
224 |
Q |
| |
|
|||||| ||| |||| || || |||| || | || ||||||||||||||||||||||| |
|
|
| T |
15585956 |
tccacaattaagagacccataaagtgggcttattatacttcgatcatgcatgggtatc |
15585899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 329
Target Start/End: Original strand, 36154197 - 36154421
Alignment:
| Q |
106 |
gttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctact |
205 |
Q |
| |
|
|||||||||| ||| ||| || |||||||||||| || | | ||||||||||||| |||||| |||| || | | |||| ||||||| | ||||| | | |
|
|
| T |
36154197 |
gttttatcaaagggatgggcaggaagagagtttccagagctattgagttaatgcatcttctttcacaactaaggggtcctaagagtgaacttcttccatt |
36154296 |
T |
|
| Q |
206 |
tcgatcatgcatgggtatcgccaaaat-tttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtg |
304 |
Q |
| |
|
|| |||||||||| |||||||| || | ||| ||| |||||| | | | |||||||||||| |||||||| | || |||||||||||||| ||||||| |
|
|
| T |
36154297 |
tcaatcatgcatgagtatcgcctaactgtttttttagcctaaggatgagtcaaccgattcacgtggaggagccatttatgttgtttgataaaaagttgtg |
36154396 |
T |
|
| Q |
305 |
tggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|| | ||||| |||||||||||| |
|
|
| T |
36154397 |
aggggcagttgaagatattgtggtt |
36154421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 29 - 329
Target Start/End: Complemental strand, 24126270 - 24125970
Alignment:
| Q |
29 |
ggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatg |
128 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| | |||||||||||||| | | ||||| ||||||| |||| || |||||||| ||||||||| |||| |
|
|
| T |
24126270 |
ggggttgttccctacggatattgggaggccaacgttgggggtgaaatttctcgaaggggctgttagccgagacaaaggttttatttaggggttggccatg |
24126171 |
T |
|
| Q |
129 |
aagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgcca |
228 |
Q |
| |
|
||||||||||| || | | ||| || ||||| |||||||| | ||||||| ||||| ||||||||| ||||||||||||||| ||||||||||| ||| |
|
|
| T |
24126170 |
aagagagtttccagggctactgacttgatgcatcttcttcctcggttacgacatcctcagagtgagcttcttctacttcgatcgtgcatgggtatttcca |
24126071 |
T |
|
| Q |
229 |
aaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggt |
328 |
Q |
| |
|
| ||||||||| | ||| ||||||||||||| ||||||||||||||| | | |||||||||||||||| || |||||| ||||||||| |||||||| |
|
|
| T |
24126070 |
gacttttctttggcttaatgacgtgccaaccgaatcacatggaggaggctgctaagttgtttgataaagagctgcgtggagcggttgaggacattgtggt |
24125971 |
T |
|
| Q |
329 |
t |
329 |
Q |
| |
|
| |
|
|
| T |
24125970 |
t |
24125970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 36 - 329
Target Start/End: Complemental strand, 24322866 - 24322574
Alignment:
| Q |
36 |
ttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagag |
135 |
Q |
| |
|
|||||| |||||||||||| |||| |||| |||||||||||| | ||||||| ||||||| |||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
24322866 |
ttccctttggatattgggaagccgacattaggggtgaaattgctcggaggggctgttagccgagatacatgttttatcgaggggctacccatgaagagag |
24322767 |
T |
|
| Q |
136 |
tttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaatttt |
235 |
Q |
| |
|
|||| | | | |||||||||||| ||||||||||| |||||||| | | |||||| |||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
24322766 |
cttctgg-gctactgagttaatgcatcttcttccacaattacgagagctgaatagtgagtttcttctacttcgatcatgcatgagtatcgcgaaactttt |
24322668 |
T |
|
| Q |
236 |
ctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||| || | |||||||||||||||||||| |||||| |||| |||| |||||||| |
|
|
| T |
24322667 |
ctttagtctaaggacgtgtcaaccaattcacatggaggaggaggctatgttgtttgataaagagttgcgtggagaggttaaggactttgtggtt |
24322574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 52 - 304
Target Start/End: Complemental strand, 4700866 - 4700615
Alignment:
| Q |
52 |
ggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttga |
151 |
Q |
| |
|
|||||||||| ||| |||||||||| | | ||||| | |||| ||||||| ||||||||| |||||||| ||||||||||| ||| || |||||||| |
|
|
| T |
4700866 |
ggaggccgtcgttgtgggtgaaatt-tctcgagggtctattagtcgagataaaggttttatcgaggggttgaccatgaagagagcttccagggttgttga |
4700768 |
T |
|
| Q |
152 |
gttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacg |
251 |
Q |
| |
|
||||||||| ||||| | |||| | ||||||| |||| |||| ||||||||||||||||||||| |||||||| ||||| | || ||||||| || |
|
|
| T |
4700767 |
gttaatgcattgtcttcaatagttgcaagatcctcagagcgagcttcttctacttcgatcatgcatatgtatcgcccaaattctattcaacctaagcact |
4700668 |
T |
|
| Q |
252 |
tgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtg |
304 |
Q |
| |
|
||||||| ||||||||||||||||| | | |||||||| ||||||||||||| |
|
|
| T |
4700667 |
tgccaactgattcacatggaggaggtgtctttgttgtttaataaagagttgtg |
4700615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 146 - 298
Target Start/End: Complemental strand, 140430 - 140279
Alignment:
| Q |
146 |
tgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgaccta |
245 |
Q |
| |
|
||||||||||||||| ||||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||| |
|
|
| T |
140430 |
tgttgagttaatgcattttcttccacagctaagtgatccttagagtgagcttcttctacttcgatcatgcatgggtatcaccaaacttttattttgtcta |
140331 |
T |
|
| Q |
246 |
agaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaaga |
298 |
Q |
| |
|
| |||| |||||||||| |||| |||||||||| | || ||||||||||||| |
|
|
| T |
140330 |
atgacgt-ccaaccgatttacatagaggaggcggctatgatgtttgataaaga |
140279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 66 - 329
Target Start/End: Original strand, 10950092 - 10950355
Alignment:
| Q |
66 |
ggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttc |
165 |
Q |
| |
|
||||||||||| || ||||||| ||| | | ||||||| ||||||||| ||||||| ||||||| |||| ||| || |||| ||||||| |||| | | |
|
|
| T |
10950092 |
ggggtgaaatttttcggaggggctgtcaaccgagataaaggttttatcgaggggttaatcatgaatagagcttccagagttgctgagttattgcatcctt |
10950191 |
T |
|
| Q |
166 |
ttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattca |
265 |
Q |
| |
|
|||||||||||| ||||| | | ||||||| |||| |||||||||||||||||| ||| |||||| ||| ||| ||||| | ||||||||||| |
|
|
| T |
10950192 |
ttccacagttacaagatcatcaaagtgagcttcttttacttcgatcatgcatggatattgccaaacctttggttggcctaaaggcacttcaaccgattca |
10950291 |
T |
|
| Q |
266 |
catggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||||||||||| | |||| || ||||||||||||| |||||| ||||||| ||| ||||| |
|
|
| T |
10950292 |
aatggaggaggcgactatgttattcgataaagagttgtatggagtacttgaggacattatggtt |
10950355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 66 - 329
Target Start/End: Original strand, 10958097 - 10958360
Alignment:
| Q |
66 |
ggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttc |
165 |
Q |
| |
|
||||||||||| || ||||||| ||| | | ||||||| ||||||||| ||||||| ||||||| |||| ||| || |||| ||||||| |||| | | |
|
|
| T |
10958097 |
ggggtgaaatttttcggaggggctgtcaaccgagataaaggttttatcgaggggttaatcatgaatagagcttccagagttgctgagttattgcatcctt |
10958196 |
T |
|
| Q |
166 |
ttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattca |
265 |
Q |
| |
|
|||||||||||| ||||| | | ||||||| |||| |||||||||||||||||| ||| |||||| ||| ||| ||||| | ||||||||||| |
|
|
| T |
10958197 |
ttccacagttacaagatcatcaaagtgagcttcttttacttcgatcatgcatggatattgccaaacctttggttggcctaaaggcacttcaaccgattca |
10958296 |
T |
|
| Q |
266 |
catggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||||||||||| | |||| || ||||||||||||| |||||| ||||||| ||| ||||| |
|
|
| T |
10958297 |
aatggaggaggcgactatgttattcgataaagagttgtatggagtacttgaggacattatggtt |
10958360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 296
Target Start/End: Complemental strand, 45396971 - 45396736
Alignment:
| Q |
67 |
gggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttct |
166 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||| |||||||||| ||| || |||| ||||||| | || ||||||||||||| || ||||| |
|
|
| T |
45396971 |
gggtgaaattgttcggaggggttgatacttgagatagatgttttatcaaagggatgatcattaagagagcgttcagagttgttgagttaacacatcttct |
45396872 |
T |
|
| Q |
167 |
tccacagttacgagatccttagagtgagcatcttctac-----ttcgatcatgcatgggtatcgccaaaat-tttctttgacctaagaacgtgccaaccg |
260 |
Q |
| |
|
|||||| | | |||||| | ||||| | |||||||| ||||||||| |||| ||||| ||||| | ||| |||| |||||| ||||||| | |
|
|
| T |
45396871 |
tccacaatcaaaggatcctcaaagtgaacttcttctacttcaattcgatcatacatgagtatcaccaaattatttttttggcctaagggtgtgccaagcc |
45396772 |
T |
|
| Q |
261 |
attcacatggaggaggcggttgtgttgtttgataaa |
296 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
45396771 |
attcacttggaggaggtagttgtgttctttgataaa |
45396736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 25020847 - 25020955
Alignment:
| Q |
221 |
tatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggagtggttgaggat |
320 |
Q |
| |
|
||||| |||| |||||||| ||||| | |||||||| ||||||| |||||||||| | ||||||||||||||||| | |||||| |||||| | |
|
|
| T |
25020847 |
tatcgtcaaacttttcttttgtctaaggatgtgccaacatattcacacggaggaggcgactatgttgtttgataaagagctacgtggagcagttgagaac |
25020946 |
T |
|
| Q |
321 |
attgtggtt |
329 |
Q |
| |
|
||||||||| |
|
|
| T |
25020947 |
attgtggtt |
25020955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 105 - 329
Target Start/End: Complemental strand, 19278345 - 19278121
Alignment:
| Q |
105 |
ggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctac |
204 |
Q |
| |
|
|||||||| ||||||| | |||||| |||| ||| || | || |||||||||||| |||||||| |||||||| |||||| | ||||||| |||||||| |
|
|
| T |
19278345 |
ggttttattgaggggttagccatgaatagagcttccagggctgctgagttaatgcatcttcttcctcagttacgggatcctcatagtgagcttcttctac |
19278246 |
T |
|
| Q |
205 |
ttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtg |
304 |
Q |
| |
|
|| |||| ||||||||||| |||||| ||||| ||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||| || | |
|
|
| T |
19278245 |
tttgatcgtgcatgggtattgccaaatttttcattggcttaagaacgtgccaaccgattcacatggaggaggcggctatgttgtttaataaagagctgcg |
19278146 |
T |
|
| Q |
305 |
tggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|| | ||||||||| ||||||||| |
|
|
| T |
19278145 |
tgaaacggttgaggacattgtggtt |
19278121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 47680199 - 47680075
Alignment:
| Q |
201 |
ctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagt |
300 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||| |||| || ||| | ||||||||||||||| ||| | || ||| | |||||||||||||||||| |
|
|
| T |
47680199 |
ctacttctatcatgcatgggtatcgttaaagtttt-tttggccaaaggatgtgccaaccgattcatatgcaagatgcgactatgttgtttgataaagagt |
47680101 |
T |
|
| Q |
301 |
tgtgtggagtggttgaggatattgtg |
326 |
Q |
| |
|
||||||||| ||||||||| |||||| |
|
|
| T |
47680100 |
tgtgtggagcggttgaggacattgtg |
47680075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 32802905 - 32802797
Alignment:
| Q |
68 |
ggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttctt |
167 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||||| |||||||| |||||| |||| || ||| ||||||| ||||||| |||||| |
|
|
| T |
32802905 |
ggtgaaattgttcagaggggttgttagacgagatagaggttttatcgaggggttgaccatgaaaagagcttttaggactgttgagctaatgcatcttctt |
32802806 |
T |
|
| Q |
168 |
ccacagtta |
176 |
Q |
| |
|
|||| |||| |
|
|
| T |
32802805 |
ccacggtta |
32802797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19279826 - 19279734
Alignment:
| Q |
19 |
agcatcgcgaggggtttttccctatggatattgggaggccgtcattgggggtgaaattgtttggaggggttgttagctgagataatggtttta |
111 |
Q |
| |
|
||||||| |||||||| |||| | |||||| |||| ||| | || |||||||||||| | ||||||| ||||||| ||||||| ||||||| |
|
|
| T |
19279826 |
agcatcgtgaggggttgttccatgcagatattaggagaccgacgttaggggtgaaattgctcggaggggctgttagccgagataaaggtttta |
19279734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 25706523 - 25706611
Alignment:
| Q |
221 |
tatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggcggttgtgttgtttgataaagagttgtgtggag |
309 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| || |||||| |
|
|
| T |
25706523 |
tatcaccaaaattttctttggtctaagaacgtgccaaccgattcacatggaggagacggctatgttgtttgataaagagctgcgtggag |
25706611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 301
Target Start/End: Original strand, 23808588 - 23808826
Alignment:
| Q |
63 |
ttgggggtgaaattgtttggaggggttgttagctgagataatggttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaac |
162 |
Q |
| |
|
||||||||||| ||| || |||||| |||||| || ||| |||||| || || |||||| ||||||||||||| | |||||||||||||| || | |
|
|
| T |
23808588 |
ttgggggtgaatttgcttagaggggctgttagtggatatagaggttttgtcgagtggttggctatgaagagagtttttcaagttgttgagttaatacatc |
23808687 |
T |
|
| Q |
163 |
ttcttccacagttacgagatccttagagtgagcatcttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgat |
262 |
Q |
| |
|
|||||||||||||| | | |||| | |||||| | ||||||||||| |||||||| ||||| |||| |||||||| || || || ||||||| ||| |
|
|
| T |
23808688 |
ttcttccacagttaaggggtcctcaacgtgagcttattctacttcgaccatgcatgagtatcatcaaacctttctttggccaaaagacatgccaactgat |
23808787 |
T |
|
| Q |
263 |
tcacatggaggaggcggttgtgttgtttgataaagagtt |
301 |
Q |
| |
|
||||||||| || || | ||||||||||||||||||| |
|
|
| T |
23808788 |
tcacatggatgatgcttctatgttgtttgataaagagtt |
23808826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 24403683 - 24403605
Alignment:
| Q |
199 |
ttctacttcgatcatgcatgggtatcgccaaaattttctttgacctaagaacgtgccaaccgattcacatggaggaggc |
277 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| | || |||| |||||| || || ||| |||||||||||||||||| |
|
|
| T |
24403683 |
ttctacttcgatcatgcatgagtatcaccaaactattttttggcctaaggacatgttaactgattcacatggaggaggc |
24403605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 41680571 - 41680464
Alignment:
| Q |
107 |
ttttatcaaggggttggtcatgaagagagtttctagtgttgttgagttaatgcaacttcttccacagttacgagatccttagagtgagcatcttctactt |
206 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| || ||||||||||||| || ||||||||| | ||| | |||||| ||||||| |||||||||| |
|
|
| T |
41680571 |
ttttatcgaggggttggccatgaagagagttgtaagggttgttgagttaaaacatcttcttccaaaattaagggatcct---agtgagcttcttctactt |
41680475 |
T |
|
| Q |
207 |
cgatcatgcat |
217 |
Q |
| |
|
|||| ||||| |
|
|
| T |
41680474 |
tgatcgtgcat |
41680464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 56461225 - 56461271
Alignment:
| Q |
283 |
tgttgtttgataaagagttgtgtggagtggttgaggatattgtggtt |
329 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || ||||||||| |
|
|
| T |
56461225 |
tgttgtttgataaagagttgcgtggagcggttgaagacattgtggtt |
56461271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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