View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8826_low_6 (Length: 249)
Name: NF8826_low_6
Description: NF8826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8826_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 46208908 - 46208690
Alignment:
| Q |
9 |
aatgaaatgaaattagaacaaaacgtcaaaataatagtaaatgttgtttcgatataaaaccctcagatcgaagaacgtgaatttcacattctcctcctta |
108 |
Q |
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| T |
46208908 |
aatgaaatgaaattagaacaaaacaacaa--taacaataaatgttgtttcgatctaaagccctcagatcgaagaacgtgaatttcacattctcctcctta |
46208811 |
T |
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| Q |
109 |
accttctccttcttcgaccactttctcctttcatcccaattctcattcatctcctcaacaaacgccttcgtctccg----cgccacttcttctgaagcga |
204 |
Q |
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| T |
46208810 |
accttctccttcttcaacccctttctcctttcattccaattctcattcatctcttcaacaaatgccttcatctccgcgtccgccactacttccgaattga |
46208711 |
T |
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| Q |
205 |
aattcatgtccccttcccatg |
225 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
46208710 |
aattcatgtcgccttcccatg |
46208690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 48962832 - 48962726
Alignment:
| Q |
119 |
tcttcgaccactttctcctttcatcccaattctcattcatctcctcaacaaacgccttcgtctccgcgccacttcttctgaagcgaaattcatgtcccct |
218 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48962832 |
tcttcgacccctttctcctttcattccaattctcattcatctcctcaacaaacgccttcgtctccgcgccacttcttctgaagcgaaattcatgtcacct |
48962733 |
T |
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| Q |
219 |
tcccatg |
225 |
Q |
| |
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||||||| |
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| T |
48962732 |
tcccatg |
48962726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 17368244 - 17368105
Alignment:
| Q |
90 |
tttcacattctcctccttaaccttctccttcttcgaccactttctcctttcatcccaattctcattcatctcctcaacaaacgccttcgtctccg----c |
185 |
Q |
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||||||||||||||||| |||||||||||||||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
17368244 |
tttcacattctcctcctcaaccttctccttcttcaacccttttctcctctcattccaattctcattcatctcctccacaaacgccttcgtctccgcgtcc |
17368145 |
T |
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| Q |
186 |
gccacttcttctgaagcgaaattcatgtccccttcccatg |
225 |
Q |
| |
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||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
17368144 |
gccacttcttccgaagcgaaattcacgtctccttcccatg |
17368105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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