View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8826_low_8 (Length: 230)
Name: NF8826_low_8
Description: NF8826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8826_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 41310192 - 41310388
Alignment:
| Q |
19 |
ctacccaaaacagaaaattccaacacggcaggccctgctattgcaactcagcagctgcacggctacagcagcacaggaaaaacagcaggtgctgtgtgaa |
118 |
Q |
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| T |
41310192 |
ctacccaaaacagaaaattccaacacggcaggccctgctattgcaactcagcagctgcacggctacagcagcacatgaaaaacagcaggtgctgtttgaa |
41310291 |
T |
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| Q |
119 |
cccgcaaaggagcccccaaaaactcagcagagaacagaaaaactgacagaataccggcagcnnnnnnnctgcagtacaccgcagcacctaacacagg |
215 |
Q |
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| T |
41310292 |
cccgcaaaggagcccccaaaaactcagcagagaacagcaaaactgacagaataccggcagcaaagaaactgcagtacaccgcagcacccaacacagg |
41310388 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 31225603 - 31225532
Alignment:
| Q |
84 |
cagcagcacaggaaaaa-cagcaggtgctgtgtgaacccgcaaaggagcccccaaaaactcagcagagaaca |
154 |
Q |
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|||| |||||||||||| ||||| ||| ||| ||||||| |||| |||||||||||||||||||| ||||| |
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| T |
31225603 |
cagctgcacaggaaaaaacagcaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcgaaca |
31225532 |
T |
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