View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8827_low_1 (Length: 618)
Name: NF8827_low_1
Description: NF8827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8827_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Original strand, 29760868 - 29761471
Alignment:
| Q |
15 |
atcaacattccttatattgtttgtattggtattgttattttactagtgaatgtgatttgatgatatattatggatttcataatgcattacattgatttct |
114 |
Q |
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| T |
29760868 |
atcaacattccttatattgtttgtattggtattgttattttactactgaatgtggtttcatgatatattatggatttcataatgcattacattgatttct |
29760967 |
T |
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| Q |
115 |
ctgttttggtgaaaaatgttatgttggtttgaggcttgagagtatgttatgccatgtttgggaaagtattgaggtcctcaaaggtgattttatatggaac |
214 |
Q |
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| T |
29760968 |
ctgttttggtgaaaaatgttatgttggtttgaggcttgagagtatgttatgccatgtttgggaaagtattgaggtcctcaaaggtgattttatatggaac |
29761067 |
T |
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| Q |
215 |
aaaggtgattttgttttggttatagtttgttatgattgatttgttcttgtaaggactagggaaaatgcctgtaaacatggatgtagacgtggacactgga |
314 |
Q |
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| T |
29761068 |
aaaggtgattttgttttggttatagtttgttatgattgatttgttcttgtaaggactagggaaaaggcctgtaaatatggatgtagacgtggacaccgga |
29761167 |
T |
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| Q |
315 |
taaaactatcgctcatagactgataatagtttaagaaaatggtagtaattgagtgtctgacatcaataaatgtcggatactggacaccgatttcaatctg |
414 |
Q |
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| T |
29761168 |
taaaactatcgctcatagactgataatagtttaagaaaatggtagtaattgagtgtctgacatcaataaatgtcggatactggacaccgatttcaatctg |
29761267 |
T |
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| Q |
415 |
tgagtcgactatgtggttttgttttgttgcgaagatatacatagccagtctagaatttggatgaaggagactatgagagggttgtattaggcctattcac |
514 |
Q |
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| T |
29761268 |
tgagtcgactatgtggttttgttttgttgcgaagatatacatagccagtctagaatttggatgaaggagactaggagagggttgtattaggcctattcac |
29761367 |
T |
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| Q |
515 |
atgcaacacaattttgtcaaatttcggaactatcctagattcacaattagggtaatagtggtgctcttgcagtttctgttagctaatgtagaaggaatag |
614 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29761368 |
atgcgacacaattttgtcaaatttcggaactatcctagattcacaattagggtaatagtggtgctattgcagtttctgttagctaatgtagaaggaatag |
29761467 |
T |
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| Q |
615 |
tgga |
618 |
Q |
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| T |
29761468 |
tgga |
29761471 |
T |
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