View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8827_low_2 (Length: 444)

Name: NF8827_low_2
Description: NF8827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8827_low_2
NF8827_low_2
[»] chr4 (3 HSPs)
chr4 (1-429)||(54621784-54622212)
chr4 (22-79)||(40224540-40224597)
chr4 (29-79)||(18513250-18513300)
[»] chr1 (2 HSPs)
chr1 (10-71)||(40747790-40747851)
chr1 (22-79)||(19637761-19637818)
[»] chr8 (3 HSPs)
chr8 (22-78)||(34201056-34201112)
chr8 (5-60)||(40063928-40063982)
chr8 (30-78)||(37225753-37225801)
[»] chr5 (6 HSPs)
chr5 (12-60)||(31264421-31264469)
chr5 (17-58)||(39424629-39424670)
chr5 (19-79)||(23287358-23287418)
chr5 (27-79)||(28296326-28296378)
chr5 (27-79)||(38749572-38749624)
chr5 (22-70)||(41558701-41558749)
[»] chr7 (1 HSPs)
chr7 (29-79)||(38134415-38134465)
[»] chr3 (2 HSPs)
chr3 (22-60)||(46191373-46191411)
chr3 (22-71)||(41319327-41319376)
[»] chr2 (3 HSPs)
chr2 (27-101)||(19613600-19613674)
chr2 (30-79)||(18570973-18571022)
chr2 (3-71)||(40681955-40682024)
[»] chr6 (2 HSPs)
chr6 (27-60)||(4859141-4859174)
chr6 (22-79)||(9024185-9024242)


Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 54621784 - 54622212
Alignment:
Q  1 acagacactggacacagacacacacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtgctagagtcgtgttggtgtcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54621784 acagacactggacacagacacacacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtgccagagtcgtgttggtgtcgg 54621883  T
Q  101 ataccaaaagtatcagacataagacacgcctaatatgaggagtattcgtgcttggtggaaaggcacccatgttattcatacataattgcataataatagt 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54621884 ataccaaaagtatcagacacaagacacgcctaatatgaggagtattcgtgcttggtggaaaggcacccatgttattcatacataattgcataataatagt 54621983  T
Q  201 tgaacataagctccacatttagttgcattgcatgcattagcattgaagcaaaaaatatgttgcataattatttgttaattactcaattgccacaagaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54621984 tgaacataagctccacatttagttgcattgcatgcattagcattgaagcaaaaaatatgttgcataattctttgttaattactcaattgccacaagaatt 54622083  T
Q  301 gaaagagcagagaacaaaatagtaaagtaattaaggaagaagatgaatagaataccgggtgagtaaggagcagaaatgtttgttctcaaattcaaaattg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54622084 gaaagagcagagaacaaaatagtaaagtaattaaggaagaagatgaatagaataccgggtgagtaaggagcagaaatgtttgttctcaaattcaaaattg 54622183  T
Q  401 gcctctggaatgaagaaccctgcaaaaac 429  Q
    |||||||||||||||||||||||||||||    
T  54622184 gcctctggaatgaagaaccctgcaaaaac 54622212  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 40224597 - 40224540
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    ||||||||||||| |||||| ||||||||||||| |||| |||| ||||| |||||||    
T  40224597 acacatcgacacccataataatttgagaaaatgatataagtcaatgtaataatatgtg 40224540  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 18513300 - 18513250
Alignment:
Q  29 gacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    |||||| |||||| |||||||||||||||||| |||| ||||| |||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtg 18513250  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 40747851 - 40747790
Alignment:
Q  10 ggacacagacacacacatcgacaccaataatagtttgagaaaatgacataactcaaggtaat 71  Q
    ||||||||||||| ||| ||||||  |||||| |||||||||||||||||| |||| |||||    
T  40747851 ggacacagacacagacaccgacacggataataatttgagaaaatgacataattcaatgtaat 40747790  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 19637761 - 19637818
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    ||||||||||||| |||||| ||| |||||||||||| | |||| ||||| |||||||    
T  19637761 acacatcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtg 19637818  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 34201112 - 34201056
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgt 78  Q
    |||||| ||||| ||||||| |||||||||||||||||| |||| ||||| ||||||    
T  34201112 acacattgacactaataataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 40063928 - 40063982
Alignment:
Q  5 acactggacacagacacacacatcgacaccaataatagtttgagaaaatgacataa 60  Q
    ||||||||||| |||||  ||| |||||||||||||| ||||||||||||||||||    
T  40063928 acactggacac-gacacggacaccgacaccaataataatttgagaaaatgacataa 40063982  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 37225801 - 37225753
Alignment:
Q  30 acaccaataatagtttgagaaaatgacataactcaaggtaatgatatgt 78  Q
    |||||||||||| ||||||||||| |||||| |||| ||||| ||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaatcatatgt 37225753  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 31264421 - 31264469
Alignment:
Q  12 acacagacacacacatcgacaccaataatagtttgagaaaatgacataa 60  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  31264421 acacggacacacacatcgacacaagtaataatttgagaaaatgacataa 31264469  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39424629 - 39424670
Alignment:
Q  17 gacacacacatcgacaccaataatagtttgagaaaatgacat 58  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  39424629 gacactcacgtcgacaccaataataatttgagaaaatgacat 39424670  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 23287418 - 23287358
Alignment:
Q  19 cacacacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    ||||||| ||||||||||||||| |||  ||||||||||||| ||||  |||| |||||||    
T  23287418 cacacacgtcgacaccaataataatttaggaaaatgacataattcaatataattatatgtg 23287358  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 28296326 - 28296378
Alignment:
Q  27 tcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    |||||||| |||||| |||||||||||||||||| |||| ||| | |||||||    
T  28296326 tcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtg 28296378  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 38749624 - 38749572
Alignment:
Q  27 tcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    |||||||| |||||| ||||| |||||||||||| |||| ||||| |||||||    
T  38749624 tcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtg 38749572  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 41558749 - 41558701
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaa 70  Q
    |||||| ||||| ||||||| |||||||||||||||||| |||| ||||    
T  41558749 acacattgacacaaataataatttgagaaaatgacataattcaaagtaa 41558701  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 38134465 - 38134415
Alignment:
Q  29 gacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    |||||| |||||| |||||||||||||||||| |||| ||||| |||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtg 38134415  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 46191411 - 46191373
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataa 60  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  46191411 acacatcgacaccaataataatttgagaaaatcacataa 46191373  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 41319376 - 41319327
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaat 71  Q
    |||| ||||||||||||||| ||||| |||||||||||| |||| |||||    
T  41319376 acacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 19613674 - 19613600
Alignment:
Q  27 tcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtgctagagtcgtgttggtgtcgga 101  Q
    |||||||  |||||| ||||||||||| |||||| |||| ||||||||||||| |||  ||| || |||||||||    
T  19613674 tcgacactcataataatttgagaaaataacataattcaatgtaatgatatgtgttagtatcgcgtcggtgtcgga 19613600  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 18570973 - 18571022
Alignment:
Q  30 acaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    ||||| |||||| |||||||||||||||||| |||| ||||| |||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtg 18571022  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 40681955 - 40682024
Alignment:
Q  3 agacactggacacagacac-acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaat 71  Q
    ||||||| |||| |||||| |||| | |||||| |||||| |||||||||||||||||| |||| |||||    
T  40681955 agacactagacatagacactacacttggacaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 4859174 - 4859141
Alignment:
Q  27 tcgacaccaataatagtttgagaaaatgacataa 60  Q
    ||||||||||||||| ||||||||||||||||||    
T  4859174 tcgacaccaataataatttgagaaaatgacataa 4859141  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 9024242 - 9024185
Alignment:
Q  22 acacatcgacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtg 79  Q
    |||| ||||||| ||| ||| |||||||||||||||||| |||| ||||| |||||||    
T  9024242 acacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtg 9024185  T

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