View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8827_low_3 (Length: 318)
Name: NF8827_low_3
Description: NF8827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8827_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 39124536 - 39124838
Alignment:
| Q |
1 |
tcttgaaggtttcttatttctggaatgcatataattttcttgaaggtttcatttaagacaactacttttatgggaaaattccaagacttaggtcctattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39124536 |
tcttgaaggtttcttatttctggaatgcatataattttcttgaaggtttcatttaagacaactacttttatgtgaaaattccaagacttaggtcctattc |
39124635 |
T |
|
| Q |
101 |
taaagataaatactatttaatctgcacaccttatttatctttatgttattttattttgttttgctagtgtcataaacttcagaagtagcattacttctac |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39124636 |
taaagataaatactaattaatctgcacaccttatttatccctatgttattttattttgttttgctagtgtcataaacttcagaagtagcattacttctac |
39124735 |
T |
|
| Q |
201 |
ctacttacccattttttcgcatactatttgtaacaggacaacagagatcatgctaggaacttggaagtggaaatatggcatgatcttgcttatatataca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39124736 |
ctacttacccattttttcgcatactatttgtaacaggacaacagagatcatgctaggaacttggaagtggaaatatggcatgatcttgcttatatataca |
39124835 |
T |
|
| Q |
301 |
tac |
303 |
Q |
| |
|
||| |
|
|
| T |
39124836 |
tac |
39124838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 39124511 - 39124548
Alignment:
| Q |
14 |
ttatttctggaatgcatataa-ttttcttgaaggtttc |
50 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39124511 |
ttatttctggaatgcatataatttttcttgaaggtttc |
39124548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 30284359 - 30284313
Alignment:
| Q |
244 |
gagatcatgctaggaacttggaagtggaaatatggcatgatcttgct |
290 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30284359 |
gagatcgtgctaggaacttggaagtggaaatatggcatgatcttgct |
30284313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University