View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8827_low_4 (Length: 316)
Name: NF8827_low_4
Description: NF8827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8827_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 28871084 - 28870784
Alignment:
| Q |
1 |
acggcaagagctttagagcacatgttgcctataaaaatggcttagctatactataccattgaaaatgaaagaaagactaaaatttatcaaataatgttca |
100 |
Q |
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| T |
28871084 |
acggcaagagctttagagcacatgttgcctataaaaatggcttagctatactataccattgaaaatgaaagaaagactaaaatttatcaaacaatgttca |
28870985 |
T |
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| Q |
101 |
tatcccactccttgatcaacgggaaagacgactcaaaaaatttatgaacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtg |
200 |
Q |
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| T |
28870984 |
tatcccactccttgatcaacgggaaagacgactcaaaaaatttatgaacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtg |
28870885 |
T |
|
| Q |
201 |
caaaaacataatgagcagtgaatggctcaacaatctgaaagtacaaaatgaaacaattcagaaggaaagtaatagaatcagatcccatacattagatgat |
300 |
Q |
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| T |
28870884 |
caaaaacgtaatgagcagtgaatggctcaacaatctgaaagtacaaaatgaaacaattcagaaggaaagtaatagaatcagatcccatacattagatgat |
28870785 |
T |
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| Q |
301 |
g |
301 |
Q |
| |
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| T |
28870784 |
g |
28870784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 53124952 - 53125047
Alignment:
| Q |
147 |
aacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtgcaaaaacataatgagcagtgaatggctcaacaatctgaaagt |
242 |
Q |
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| T |
53124952 |
aacaaacctgcagaacccaatgtgcacaactcaagaaccttgcaactccaagggcaaaaacatagtgtgctgtgaatggttcaacaatctgaaagt |
53125047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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