View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8827_low_5 (Length: 242)
Name: NF8827_low_5
Description: NF8827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8827_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38379294 - 38379522
Alignment:
| Q |
1 |
agttgatgaaggtatttaggcacataataa---agatatatatgatactaattatgaaaatgagattaatattttagagaagctaattaatgaaatgtgg |
97 |
Q |
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| T |
38379294 |
agttgatgaaggtatttaggcacataataatgaagatatatatgatactaattatgaaaatgagattaatattttagagaagctaattaatgaaatgtgg |
38379393 |
T |
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| Q |
98 |
aatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataagccattctccccaaatag |
197 |
Q |
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| T |
38379394 |
aatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataagccattctccccaaatag |
38379493 |
T |
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| Q |
198 |
gtaaataacaatggatcaattgtacatac |
226 |
Q |
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| T |
38379494 |
gtaaataacaatggatcaattgtatatac |
38379522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 29206818 - 29206685
Alignment:
| Q |
80 |
ctaattaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataa |
179 |
Q |
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| T |
29206818 |
ctaattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttactttgataa |
29206719 |
T |
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| Q |
180 |
gccattctccccaaataggtaaataacaatggat |
213 |
Q |
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| T |
29206718 |
gccattcttcccacaaaggtaaataacaaaggat |
29206685 |
T |
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