View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8828_high_3 (Length: 325)
Name: NF8828_high_3
Description: NF8828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8828_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 592812 - 593129
Alignment:
| Q |
1 |
taaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttgaaaatgacaaattaatataaacacaaaatttctagaaaaacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
592812 |
taaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaaacaac |
592911 |
T |
|
| Q |
101 |
acagggaacagatggagtaacatttattctcttaattttctactcattagtgtt---actcatcagttctcattccagagctaaaattcttcacttagaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592912 |
acagggaacagatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcacttagaa |
593011 |
T |
|
| Q |
198 |
tactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg-tat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |
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| T |
593012 |
tactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgttat |
593111 |
T |
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| Q |
297 |
gtacagatcaccacaggt |
314 |
Q |
| |
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|||||||||||||||||| |
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| T |
593112 |
gtacagatcaccacaggt |
593129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 314
Target Start/End: Complemental strand, 579612 - 579292
Alignment:
| Q |
2 |
aaaaggtaagggaaaaaatttaccttttgatatt----gttaatactactttaaatttgaaaatgacaaattaatataaacacaaaatttctagaaaaac |
97 |
Q |
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|||||| ||||||||||| || |||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
579612 |
aaaaggcaagggaaaaaagtttccttttaatgttaatagttaatactactttaaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaaac |
579513 |
T |
|
| Q |
98 |
aacacagggaacagatggagtaacatttattctcttaattttctactcattagtgtta---ctcatcagttctcattccagagctaaaattcttcactta |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
579512 |
aacacagggaacagatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcactta |
579413 |
T |
|
| Q |
195 |
gaatactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg- |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
579412 |
gaatactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgt |
579313 |
T |
|
| Q |
294 |
tatgtacagatcaccacaggt |
314 |
Q |
| |
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||||||||||||||||||||| |
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| T |
579312 |
tatgtacagatcaccacaggt |
579292 |
T |
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