View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8828_high_5 (Length: 223)
Name: NF8828_high_5
Description: NF8828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8828_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 30633006 - 30632882
Alignment:
| Q |
47 |
tattatgggaaacggtaagtaaagaataccgtttagtgcacactgtatgtgtaactttgaatgtgtgtagctttgagacttgattagatatataaagaga |
146 |
Q |
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| T |
30633006 |
tattatgggaaacggtaagtaaagaataccgtttagtgcacactgtatgtgtaactttgaatgtgtgtagctttgagacttgattagatatataaagaga |
30632907 |
T |
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| Q |
147 |
agtatgtgcaagagttaattgaaat |
171 |
Q |
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| T |
30632906 |
agtatgtgcaagagttaattgaaat |
30632882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 30669415 - 30669291
Alignment:
| Q |
47 |
tattatgggaaacggtaagtaaagaataccgtttagtgcacactgtatgtgtaactttgaatgtgtgtagctttgagacttgattagatatataaagaga |
146 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30669415 |
tattatgggaaacggtaagtcaagaataccgtttagtgcacactgtatgtgtagctttggatgtgtgtagctttgagacttgattagatatataaagaga |
30669316 |
T |
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| Q |
147 |
agtatgtgcaagagttaattgaaat |
171 |
Q |
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| T |
30669315 |
agtatgtgcaagagttaattgaaat |
30669291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 30660735 - 30660635
Alignment:
| Q |
47 |
tattatgggaaacggtaagtaaagaataccgtttagtgcacactgtatgtgtaactttgaatgtgtgtagctttgagacttgattagatatataaagaga |
146 |
Q |
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| T |
30660735 |
tattatgggaaacggtaagtaaagaataccgtttagtgcacactgtatgtgtaactttgaatgtgtgtagctttgagacttgattagatatataaagaga |
30660636 |
T |
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| Q |
147 |
a |
147 |
Q |
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| T |
30660635 |
a |
30660635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 30630849 - 30630801
Alignment:
| Q |
116 |
gctttgagacttgattagatatataaagagaagtatgtgcaagagttaa |
164 |
Q |
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| T |
30630849 |
gctttgagacttgattagataaataaagagaagtatatgcaagagttaa |
30630801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 35404254 - 35404210
Alignment:
| Q |
115 |
agctttgagacttgattagatatataaagagaagtatgtgcaaga |
159 |
Q |
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| T |
35404254 |
agctttgagatttgatcagatatataaagagaagtatgtgcaaga |
35404210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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