View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8828_low_1 (Length: 503)
Name: NF8828_low_1
Description: NF8828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8828_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 27 - 480
Target Start/End: Original strand, 34563277 - 34563729
Alignment:
| Q |
27 |
atagggtccggatgaatacatgggtacacaacaatgatcatgtgcaacttaactatatacagcatcatctagtctataacatcaacataaacattttata |
126 |
Q |
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| T |
34563277 |
atagggtccggatgaataca------cataacaatgatcatgtgcaacttaactatatacagcaccatctagtctataacatcaacatcaacattttata |
34563370 |
T |
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| Q |
127 |
catatat------gagaaggtaacgaacatttacatgaaaattgtatacaattactatatatcctcataaaccaattattaatttcaata--agatattg |
218 |
Q |
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| T |
34563371 |
catatatatatatgagaatgtaacgaacatttacatgaaaattttatgcaa---ctatatatcctcataaaccaattattaatttcaatataagatattg |
34563467 |
T |
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| Q |
219 |
acaatataggggtttatgaatagttttcaagtactcaatgatgatgggcatcaggtccaccgggacttaatctttgaagctcgtcacgttttccaccttc |
318 |
Q |
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| T |
34563468 |
acaatacagaggtttatgaatagttttgatataattaatgatgatgagcgtcaggtccaccgggacttaatctttgtagctcgtcacgttttccaccttc |
34563567 |
T |
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| Q |
319 |
ttcttttgcaaatggttgtatggaattccaattccaatgagaagttgctaacatgtgatgatcacttaccattgttgggttcaaatgtcgtgtctcacct |
418 |
Q |
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| T |
34563568 |
ttcttctggaaatggttgtatggaattccaattccaatgagaagttgctaacatgtgatgatcacttaccattgttgggttcagatgtcgtgtctcacct |
34563667 |
T |
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| Q |
419 |
ccaccacttagaaccaacactaacaaaatgcaacccaaaattctcgtttctttggtcattct |
480 |
Q |
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| T |
34563668 |
ctaccacatagaaccaacactaacaaaatgcaactcaaaattctcgtttctttggtcattct |
34563729 |
T |
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