View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8828_low_2 (Length: 464)

Name: NF8828_low_2
Description: NF8828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8828_low_2
NF8828_low_2
[»] chr3 (9 HSPs)
chr3 (19-155)||(50742802-50742938)
chr3 (247-443)||(50743527-50743723)
chr3 (257-369)||(52009230-52009342)
chr3 (263-339)||(502406-502482)
chr3 (259-341)||(41457508-41457590)
chr3 (292-341)||(23151570-23151619)
chr3 (259-328)||(35512548-35512617)
chr3 (299-348)||(37125947-37125996)
chr3 (292-341)||(38253262-38253311)
[»] chr6 (1 HSPs)
chr6 (259-371)||(2560320-2560431)
[»] chr8 (3 HSPs)
chr8 (265-346)||(27225600-27225681)
chr8 (292-341)||(32834892-32834941)
chr8 (259-303)||(41873580-41873624)
[»] chr7 (3 HSPs)
chr7 (261-363)||(39494975-39495077)
chr7 (292-341)||(47019892-47019941)
chr7 (293-341)||(25105893-25105941)
[»] chr5 (2 HSPs)
chr5 (259-329)||(8935148-8935218)
chr5 (288-338)||(8336140-8336190)
[»] chr1 (5 HSPs)
chr1 (282-371)||(8970428-8970515)
chr1 (289-338)||(6979420-6979469)
chr1 (288-341)||(15475309-15475362)
chr1 (292-341)||(44053980-44054029)
chr1 (288-341)||(48541931-48541984)
[»] chr4 (6 HSPs)
chr4 (259-323)||(31445440-31445504)
chr4 (259-338)||(44878992-44879071)
chr4 (259-325)||(23114498-23114564)
chr4 (292-346)||(36224474-36224528)
chr4 (298-346)||(3874928-3874976)
chr4 (320-356)||(6508836-6508872)
[»] chr2 (4 HSPs)
chr2 (263-327)||(9728800-9728864)
chr2 (271-346)||(14286621-14286696)
chr2 (262-313)||(18377237-18377288)
chr2 (292-341)||(31546624-31546673)
[»] scaffold0562 (1 HSPs)
scaffold0562 (298-346)||(5747-5795)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 50742802 - 50742938
Alignment:
Q  19 atagtgataggacatatataaataaaataacaacacatattgtgctatgcacttatcagtatcacctatctgcacagtttggctatcatttgttcacatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50742802 atagtgataggacatatataaataaaataacaacacatattgtgctatgcacttatcagtatcacctatctgcacagtttggctatcatttgttcacatg 50742901  T
Q  119 ttcgtccttcgacccataaaataattgagaaataaca 155  Q
    |||||||||||||||||||||||||||||||||||||    
T  50742902 ttcgtccttcgacccataaaataattgagaaataaca 50742938  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 247 - 443
Target Start/End: Original strand, 50743527 - 50743723
Alignment:
Q  247 ctataaatctacgacagatactactcaca-ctcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattca 345  Q
    |||||||||||| | ||||||||| |||| |||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50743527 ctataaatctacaagagatactacccacatctcaaa-taatctaagttacatcccaaaattactaatacaccctttaattaaaataaaaatttcaattca 50743625  T
Q  346 attcaaaacccacaaaacacaatttatgtgttctcttcaaacgaaaaagttcacgtatcccctcaaacttagaaagaagccaatcacgtcttcatctc 443  Q
    |||||||||||||| |||||| | ||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50743626 attcaaaacccacacaacacagtctatgtattatcttcaaacaaaaaagttcacgtatcccctcaaactcagaaagaagccaatcacgtcttcatctc 50743723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 369
Target Start/End: Original strand, 52009230 - 52009342
Alignment:
Q  257 acgacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaattcaaaaccc 356  Q
    |||||| |||||| |||| | | ||||||||||| |||||  ||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||    
T  52009230 acgacatatactattcactccccaaataatccaagttacacaccaaaattactaatataccctttaattaaaataaaaacttcaatttaattcaaaaccc 52009329  T
Q  357 acaaaacacaatt 369  Q
    |||||||||||||    
T  52009330 acaaaacacaatt 52009342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 502482 - 502406
Alignment:
Q  263 gatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttc 339  Q
    |||||||||||||| | ||||||||||| || || || |||||||| |||| | |||||||||||||||||||||||    
T  502482 gatactactcacaccccaaataatccaagtttcaccctaaaattaccaataaaccctttaattaaaataaaaatttc 502406  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 41457590 - 41457508
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    |||| ||||||||||||| | ||| ||  ||| ||||| |||| ||| ||||||| ||||||||| |||||||||||||||||    
T  41457590 gacacatactactcacaccccaaaaaacacaagttacaccccataatgactaatatatcctttaactaaaataaaaatttcaa 41457508  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 23151619 - 23151570
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    ||||| |||| ||| ||||||| | |||||||||||||||||||||||||    
T  23151619 ttacaccccagaatgactaatataccctttaattaaaataaaaatttcaa 23151570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 35512548 - 35512617
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaa 328  Q
    |||| ||||||||||||||| ||| || |||| ||||| |||| ||| ||||||| ||||||||| ||||    
T  35512548 gacatatactactcacactccaaaaaacccaagttacaccccataatgactaatatatcctttaactaaa 35512617  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 37125947 - 37125996
Alignment:
Q  299 ccaaaattactaatacatcctttaattaaaataaaaatttcaattcaatt 348  Q
    ||||||| ||||||| | ||||||| ||||||||||||||||| ||||||    
T  37125947 ccaaaatgactaatataccctttaactaaaataaaaatttcaaatcaatt 37125996  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 38253311 - 38253262
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    ||||| |||||||| ||||||| | ||||||| |||||||||||||||||    
T  38253311 ttacaccccaaaatgactaatataccctttaaataaaataaaaatttcaa 38253262  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 371
Target Start/End: Complemental strand, 2560431 - 2560320
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaattcaaaacccac 358  Q
    |||||||||||| ||||| | ||||||||||| ||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||| |||||||||    
T  2560431 gacagatactac-cacaccctaaataatccaagttacaccccaaaaatactaatataccctttaattaaaataaaaatttcaatccaatttaaaacccac 2560333  T
Q  359 aaaacacaattta 371  Q
    ||||||| |||||    
T  2560332 aaaacacgattta 2560320  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 27225681 - 27225600
Alignment:
Q  265 tactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaa 346  Q
    |||||| ||||| | ||||||||||| ||| |||||||||||| ||||| | | ||||||||||||||||||||||||||||    
T  27225681 tactacccacacccgaaataatccaagttatatcccaaaattattaatataccttttaattaaaataaaaatttcaattcaa 27225600  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 32834941 - 32834892
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    |||||||||| ||| ||||||| | ||||||| |||||||||||||||||    
T  32834941 ttacatcccagaatgactaatataccctttaactaaaataaaaatttcaa 32834892  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 41873624 - 41873580
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaa 303  Q
    |||| ||||||||||||||| ||||||||||| ||||| ||||||    
T  41873624 gacaaatactactcacactccaaataatccaagttacaccccaaa 41873580  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 39495077 - 39494975
Alignment:
Q  261 cagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaattcaaaacccacaa 360  Q
    |||||||||| |||||   |||||||| || |||||  ||||||||| ||||| | | |||||||||||||||||||||||| ||||| |||||||| ||    
T  39495077 cagatactacccacacctcaaataatctaagttacactccaaaattattaatataccatttaattaaaataaaaatttcaatccaatttaaaacccagaa 39494978  T
Q  361 aac 363  Q
    |||    
T  39494977 aac 39494975  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 47019892 - 47019941
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    ||||| |||| ||| ||||||| ||||||||| |||||||||||||||||    
T  47019892 ttacaccccagaatgactaatatatcctttaactaaaataaaaatttcaa 47019941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 25105941 - 25105893
Alignment:
Q  293 tacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||||||    
T  25105941 tacaccccaaaatgactaatataccctttaactaaaataaaaatttcaa 25105893  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 8935148 - 8935218
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaa 329  Q
    |||||||||||  ||||  ||||||||||||||||||| |||||| ||||||||| | |||||||||||||    
T  8935148 gacagatactatccacatccaaaataatccaaattacaccccaaacttactaatataccctttaattaaaa 8935218  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 8336190 - 8336140
Alignment:
Q  288 caaattacatcccaaaattactaatacatcctttaattaaaataaaaattt 338  Q
    |||||||||||||| ||| ||||||| | ||||||| ||||||||||||||    
T  8336190 caaattacatcccataatgactaatataccctttaactaaaataaaaattt 8336140  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 8970515 - 8970428
Alignment:
Q  282 ataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaattcaaaacccacaaaacacaattta 371  Q
    ||||||||| ||||||| ||||||||||| || | |||| |||||||||| || |||| || ||||||||||||||||||||||| ||||    
T  8970515 ataatccaagttacatcacaaaattacta-tataccctt-aattaaaatacaattttcgatccaattcaaaacccacaaaacacagttta 8970428  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 6979469 - 6979420
Alignment:
Q  289 aaattacatcccaaaattactaatacatcctttaattaaaataaaaattt 338  Q
    |||||||| |||||||| ||||||| | ||||||| ||||||||||||||    
T  6979469 aaattacaccccaaaatgactaatataccctttaactaaaataaaaattt 6979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 15475309 - 15475362
Alignment:
Q  288 caaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    ||||||||| |||| ||| ||||||| | ||||||| |||||||||||||||||    
T  15475309 caaattacaccccagaatgactaatataccctttaactaaaataaaaatttcaa 15475362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 44053980 - 44054029
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    ||||| || ||||| ||||||| | |||||||||||||||||||||||||    
T  44053980 ttacaccctaaaatgactaatataccctttaattaaaataaaaatttcaa 44054029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 48541931 - 48541984
Alignment:
Q  288 caaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    ||||||||| |||| ||| ||||||| | ||||||| |||||||||||||||||    
T  48541931 caaattacaccccagaatgactaatataccctttaactaaaataaaaatttcaa 48541984  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 31445504 - 31445440
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaa 323  Q
    |||||||||||||||||| |  || ||||||||||||| |||||||| ||||||| | |||||||    
T  31445504 gacagatactactcacaccccgaaaaatccaaattacaccccaaaatgactaatataccctttaa 31445440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 44879071 - 44878992
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaattt 338  Q
    |||||||||||||||||| | ||| ||  ||| |||||| ||| ||| ||||||| | ||||||| ||||||||||||||    
T  44879071 gacagatactactcacaccccaaaaaacacaagttacattccataatgactaatataccctttaactaaaataaaaattt 44878992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 23114498 - 23114564
Alignment:
Q  259 gacagatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaatt 325  Q
    |||||||||||||||||| | ||| ||| ||| ||||| ||||||||||  |||| |||||||||||    
T  23114498 gacagatactactcacaccccaaaaaattcaagttacaccccaaaattatcaatatatcctttaatt 23114564  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 36224474 - 36224528
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaa 346  Q
    |||||||||| ||| ||||||| | ||||||| ||||||||||||||||| ||||    
T  36224474 ttacatcccagaatgactaatataccctttaactaaaataaaaatttcaaatcaa 36224528  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 3874928 - 3874976
Alignment:
Q  298 cccaaaattactaatacatcctttaattaaaataaaaatttcaattcaa 346  Q
    |||| ||| ||||||| ||||||||| ||||||||||||||||| ||||    
T  3874928 cccagaatgactaatatatcctttaactaaaataaaaatttcaaatcaa 3874976  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 6508836 - 6508872
Alignment:
Q  320 ttaattaaaataaaaatttcaattcaattcaaaaccc 356  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  6508836 ttaatttaaataaaaatttcaatttaattcaaaaccc 6508872  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 9728800 - 9728864
Alignment:
Q  263 gatactactcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaa 327  Q
    |||||||||||||| | ||||||||||||||||| ||  ||||||| | || |||||||||||||    
T  9728800 gatactactcacaccccaaataatccaaattacacccttaaattaccactatatcctttaattaa 9728864  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 14286621 - 14286696
Alignment:
Q  271 tcacactcaaaataatccaaattacatcccaaaattactaatacatcctttaattaaaataaaaatttcaattcaa 346  Q
    |||||| ||||| ||  ||| ||||| |||| ||| ||||||| | ||||||||||||||||||||||||| ||||    
T  14286621 tcacacccaaaaaaaaacaagttacaccccagaatgactaatataccctttaattaaaataaaaatttcaaatcaa 14286696  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 18377288 - 18377237
Alignment:
Q  262 agatactactcacactcaaaataatccaaattacatcccaaaattactaata 313  Q
    ||||||||||||||| | ||||||||||| || || ||||||||||||||||    
T  18377288 agatactactcacaccccaaataatccaagttgcaccccaaaattactaata 18377237  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 31546624 - 31546673
Alignment:
Q  292 ttacatcccaaaattactaatacatcctttaattaaaataaaaatttcaa 341  Q
    |||||||||| ||| ||||||| | ||||||| |||||||||||||||||    
T  31546624 ttacatcccagaatgactaatataccctttaactaaaataaaaatttcaa 31546673  T

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Target: scaffold0562 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 5747 - 5795
Alignment:
Q  298 cccaaaattactaatacatcctttaattaaaataaaaatttcaattcaa 346  Q
    |||| ||| ||||||| ||||||||| ||||||||||||||||| ||||    
T  5747 cccagaatgactaatatatcctttaactaaaataaaaatttcaaatcaa 5795  T

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