View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8828_low_3 (Length: 445)
Name: NF8828_low_3
Description: NF8828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8828_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 3036378 - 3036793
Alignment:
| Q |
16 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036378 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
3036477 |
T |
|
| Q |
116 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036478 |
tctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
3036577 |
T |
|
| Q |
216 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3036578 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaa |
3036677 |
T |
|
| Q |
316 |
agattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatgg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3036678 |
agattctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatgg |
3036777 |
T |
|
| Q |
415 |
tgaattgcttctgatg |
430 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3036778 |
tgaattgcttctgatg |
3036793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 16863125 - 16863540
Alignment:
| Q |
16 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
115 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| | ||| |
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|
| T |
16863125 |
gacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaa |
16863224 |
T |
|
| Q |
116 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
215 |
Q |
| |
|
|| |||||||| ||| || ||| || |||||||||| || || |||||||||||||||| |||||| ||| |||| |||||||||||||||||||| | |
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|
| T |
16863225 |
tcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaac |
16863324 |
T |
|
| Q |
216 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
315 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| |
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|
| T |
16863325 |
aagctttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaa |
16863424 |
T |
|
| Q |
316 |
agattctattgagtgtta-taagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatgg |
414 |
Q |
| |
|
| | |||| || || ||||||||| |||||||||||||||| ||||||||||| ||||||| | |||||||| | |||| | | ||||||||||| |
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|
| T |
16863425 |
tggaagtgttgaatgctacaaagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatgg |
16863524 |
T |
|
| Q |
415 |
tgaattgcttctgatg |
430 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16863525 |
tgaattgcttctgatg |
16863540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 25 - 420
Target Start/End: Original strand, 20528758 - 20529151
Alignment:
| Q |
25 |
tggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgat |
124 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
20528758 |
tggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
20528857 |
T |
|
| Q |
125 |
gtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttga |
224 |
Q |
| |
|
||||| || | | ||| ||||| | || ||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| |||||||||||||| |
|
|
| T |
20528858 |
gtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttga |
20528957 |
T |
|
| Q |
225 |
aggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctat |
324 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| | |
|
|
| T |
20528958 |
aggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagt |
20529055 |
T |
|
| Q |
325 |
tgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaatt |
420 |
Q |
| |
|
||| || ||||||||||| |||| |||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| |
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|
| T |
20529056 |
tgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatt |
20529151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 40613245 - 40612847
Alignment:
| Q |
16 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
115 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |
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|
| T |
40613245 |
gacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaa |
40613146 |
T |
|
| Q |
116 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
215 |
Q |
| |
|
|| || || || ||| || | | || ||||| | |||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| | |
|
|
| T |
40613145 |
tcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaac |
40613046 |
T |
|
| Q |
216 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
315 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| | |||| | ||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
40613045 |
aagctttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctaga------------ggaagaatcaacaa |
40612958 |
T |
|
| Q |
316 |
agattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggt |
415 |
Q |
| |
|
|| | ||||||||| |||||||| | || |||||||||| |||||||| ||||| ||||||| | ||||||| || | |||| | |||||||||||| |
|
|
| T |
40612957 |
agcaagtgttgagtgttttaagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggt |
40612858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 20542082 - 20542289
Alignment:
| Q |
21 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
|
|
| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
|
| Q |
121 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
220 |
Q |
| |
|
||| || ||| | | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
|
| Q |
221 |
ttgaaggt |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
20542282 |
ttgaaggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 426
Target Start/End: Original strand, 20542323 - 20542463
Alignment:
| Q |
286 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
385 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
|
|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
386 |
aatgcaaattatgctcaatttgaagatggtgaattgcttct |
426 |
Q |
| |
|
||||| || | |||| | ||||||||||||||||| ||||| |
|
|
| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttct |
20542463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
48 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
130 |
Q |
| |
|
|||| |||||||||||| | ||||| ||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 29945214 - 29945174
Alignment:
| Q |
86 |
ttcaattatgtggtgtgctctattgaagaatctaatgatgt |
126 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
29945174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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