View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8828_low_8 (Length: 247)
Name: NF8828_low_8
Description: NF8828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8828_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 4884397 - 4884616
Alignment:
| Q |
17 |
gaaagagaaaatagcaatcaatcaattattacttgcatatttctaatcacaatgagtttgacaaaaccacatttcgatggaagtttttacatagatacac |
116 |
Q |
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| T |
4884397 |
gaaagagaaaatagcaatcaatcaattattaattgcatatttctaatcacaatgagtttgacaaaaccacgtttcgatggaagtttttacatagatacac |
4884496 |
T |
|
| Q |
117 |
cgtaattcagacaaactcaccgtcaatctaaaaatgtatagttggatcgttggacacatcaacctcttacaagtatgtgatctataagc----ttagtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4884497 |
tgtaattcagacaaactcaccgtcaatctaaaaatgtatagttggatcgttggacacatcaacctcttacaagtatgtgatctataagcttaattagtgt |
4884596 |
T |
|
| Q |
213 |
caactttcaagatgatttct |
232 |
Q |
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|||||||||||||||||||| |
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| T |
4884597 |
caactttcaagatgatttct |
4884616 |
T |
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