View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8829_low_1 (Length: 432)

Name: NF8829_low_1
Description: NF8829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8829_low_1
NF8829_low_1
[»] chr4 (18 HSPs)
chr4 (6-432)||(52645427-52645869)
chr4 (302-402)||(23819068-23819169)
chr4 (300-432)||(24929443-24929575)
chr4 (311-382)||(11264301-11264372)
chr4 (315-432)||(45128313-45128430)
chr4 (291-432)||(54325016-54325157)
chr4 (391-432)||(4191689-4191730)
chr4 (145-181)||(9316487-9316523)
chr4 (301-369)||(29467613-29467681)
chr4 (311-428)||(30207570-30207686)
chr4 (391-429)||(41097323-41097361)
chr4 (302-402)||(2996552-2996653)
chr4 (314-355)||(25487567-25487608)
chr4 (301-346)||(41097245-41097290)
chr4 (319-431)||(49219090-49219202)
chr4 (301-353)||(22684510-22684562)
chr4 (366-429)||(24160549-24160612)
chr4 (143-179)||(46053581-46053617)
[»] chr7 (16 HSPs)
chr7 (295-432)||(3610723-3610860)
chr7 (295-429)||(28165044-28165178)
chr7 (302-385)||(39771758-39771841)
chr7 (315-432)||(15075088-15075206)
chr7 (295-353)||(27626106-27626164)
chr7 (292-353)||(941569-941630)
chr7 (300-352)||(39551536-39551588)
chr7 (296-343)||(39539765-39539812)
chr7 (196-230)||(27389308-27389342)
chr7 (311-385)||(44151479-44151553)
chr7 (295-373)||(45859510-45859587)
chr7 (300-373)||(3468623-3468696)
chr7 (295-344)||(29290371-29290420)
chr7 (311-344)||(45078316-45078349)
chr7 (296-336)||(28076600-28076640)
chr7 (145-181)||(28702640-28702676)
[»] chr6 (16 HSPs)
chr6 (300-359)||(3738092-3738151)
chr6 (300-353)||(9667973-9668026)
chr6 (302-385)||(283092-283175)
chr6 (300-375)||(4246417-4246492)
chr6 (302-352)||(31583709-31583759)
chr6 (265-353)||(2455839-2455927)
chr6 (293-385)||(31624087-31624179)
chr6 (300-375)||(6647394-6647469)
chr6 (301-383)||(2112199-2112281)
chr6 (251-353)||(2732186-2732288)
chr6 (295-353)||(7148695-7148753)
chr6 (295-349)||(34939777-34939831)
chr6 (340-432)||(1402946-1403038)
chr6 (300-353)||(2034434-2034487)
chr6 (393-432)||(4247717-4247754)
chr6 (301-353)||(8420186-8420238)
[»] chr5 (14 HSPs)
chr5 (302-432)||(14295456-14295586)
chr5 (302-376)||(40205064-40205138)
chr5 (312-432)||(34690824-34690943)
chr5 (295-343)||(41957434-41957482)
chr5 (278-353)||(14331396-14331470)
chr5 (298-353)||(17369425-17369480)
chr5 (295-353)||(11457128-11457185)
chr5 (295-353)||(19369342-19369400)
chr5 (311-431)||(37690635-37690756)
chr5 (303-352)||(10303826-10303875)
chr5 (302-343)||(21768187-21768228)
chr5 (300-432)||(36542270-36542402)
chr5 (301-431)||(18704025-18704154)
chr5 (392-432)||(28350907-28350947)
[»] chr3 (20 HSPs)
chr3 (300-375)||(30923886-30923961)
chr3 (315-382)||(36646385-36646452)
chr3 (300-429)||(43115010-43115138)
chr3 (301-353)||(20192595-20192647)
chr3 (301-363)||(31010421-31010483)
chr3 (312-373)||(53848063-53848124)
chr3 (295-375)||(37273141-37273221)
chr3 (302-372)||(2152168-2152238)
chr3 (293-343)||(5391918-5391968)
chr3 (311-432)||(38462231-38462352)
chr3 (301-375)||(54180769-54180843)
chr3 (295-340)||(1217783-1217828)
chr3 (295-376)||(1809983-1810064)
chr3 (311-376)||(48048981-48049046)
chr3 (302-343)||(53762384-53762425)
chr3 (301-353)||(3044248-3044300)
chr3 (311-343)||(13804816-13804848)
chr3 (145-181)||(20874451-20874487)
chr3 (291-323)||(31337381-31337413)
chr3 (291-343)||(41724251-41724303)
[»] chr2 (21 HSPs)
chr2 (311-431)||(1939331-1939451)
chr2 (295-432)||(9878665-9878802)
chr2 (311-430)||(10285813-10285931)
chr2 (325-432)||(28933774-28933881)
chr2 (301-385)||(32821806-32821890)
chr2 (301-353)||(34652025-34652077)
chr2 (311-420)||(33942112-33942221)
chr2 (287-363)||(1647255-1647331)
chr2 (357-431)||(10143123-10143197)
chr2 (295-432)||(1742015-1742152)
chr2 (196-230)||(9478224-9478258)
chr2 (140-178)||(11393520-11393558)
chr2 (140-178)||(11410181-11410219)
chr2 (296-353)||(43985238-43985295)
chr2 (311-375)||(750358-750422)
chr2 (293-341)||(787373-787421)
chr2 (311-363)||(10198479-10198531)
chr2 (198-230)||(13864577-13864609)
chr2 (295-327)||(41851147-41851179)
chr2 (149-181)||(43635251-43635283)
chr2 (194-226)||(43808499-43808531)
[»] chr1 (28 HSPs)
chr1 (296-353)||(26184777-26184834)
chr1 (293-352)||(28689433-28689492)
chr1 (293-376)||(35925696-35925779)
chr1 (300-350)||(6231804-6231854)
chr1 (311-385)||(30257680-30257754)
chr1 (311-432)||(36151504-36151625)
chr1 (300-385)||(11695858-11695943)
chr1 (295-352)||(34380475-34380532)
chr1 (295-363)||(32515424-32515492)
chr1 (301-385)||(39347956-39348040)
chr1 (300-363)||(27140497-27140560)
chr1 (306-385)||(27887112-27887191)
chr1 (300-343)||(29723528-29723571)
chr1 (142-181)||(29794073-29794112)
chr1 (301-425)||(30371105-30371229)
chr1 (293-375)||(37811859-37811941)
chr1 (311-431)||(4622044-4622164)
chr1 (258-351)||(15581285-15581378)
chr1 (303-376)||(27963361-27963434)
chr1 (140-181)||(29665898-29665939)
chr1 (313-432)||(30259487-30259607)
chr1 (284-353)||(33108594-33108663)
chr1 (302-375)||(39270415-39270488)
chr1 (302-401)||(12564864-12564964)
chr1 (319-383)||(31294528-31294592)
chr1 (293-385)||(37842336-37842428)
chr1 (305-353)||(44031992-44032040)
chr1 (293-349)||(45394148-45394204)
[»] chr8 (9 HSPs)
chr8 (295-353)||(5088881-5088939)
chr8 (300-385)||(39551197-39551282)
chr8 (288-348)||(3254259-3254319)
chr8 (301-353)||(12361221-12361273)
chr8 (293-375)||(10383892-10383974)
chr8 (311-349)||(14949899-14949937)
chr8 (311-373)||(25869265-25869327)
chr8 (140-181)||(7008507-7008548)
chr8 (302-350)||(9835890-9835938)
[»] scaffold0003 (1 HSPs)
scaffold0003 (295-376)||(306332-306413)
[»] scaffold0072 (1 HSPs)
scaffold0072 (302-352)||(4989-5039)
[»] scaffold0004 (1 HSPs)
scaffold0004 (296-349)||(98624-98677)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 52645427 - 52645869
Alignment:
Q  6 agaagcacagacctaaggaaattttcaatatatccaaaacaacagattttcaagtgtaagattttacttaaatagtttattttttcctatacagcgataa 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52645427 agaaacacagacctaaggaaattttcaatatatccaaaacaacagattttcaagtgtaagattttacttaaatagtttattttttcctatacagcgataa 52645526  T
Q  106 attaaaacag--------aaataaaagcattgcatgttaggtccttttttggataaacagcttaattaagcactaatagcataacttaattaaaaacgta 197  Q
    ||||||| ||        ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52645527 attaaaagagcatgttagaaataaaagcattgcatgttagggccttgtttggataaacaacttaattaagcactaatagcataacttaattaaaaacgta 52645626  T
Q  198 tcatataagtgtttatgtatgagctatttctat---------tgtttggattgacctctttaagcttgcctacttacataaacagttgagagattgtata 288  Q
    ||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52645627 tcatataagtgtttatgtatgagctatttctgtaacaaaagttgtttggattgacctctttaagcttgcctacttacataaacagttgagagattgtata 52645726  T
Q  289 gaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagctaca 388  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52645727 gaaaaacttacggaaacagctaatggcatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagctaca 52645826  T
Q  389 taaaaacagtttgaattgatttttatcttttgttatagaaatag 432  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  52645827 taaaaacagtttgaattga-ttttatcttttgttatagaaatag 52645869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 23819169 - 23819068
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagttt 400  Q
    |||||||| |||||||||||||||| |||| ||| |||||||||||||||||   | |||||  |||||||||| |||||| | || || ||||||||||    
T  23819169 aaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaacatgttataacttatatgaaaacagttt 23819070  T
Q  401 ga 402  Q
    ||    
T  23819069 ga 23819068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 432
Target Start/End: Complemental strand, 24929575 - 24929443
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagt 398  Q
    |||||||||| ||| ||||| |||||  |||| ||| |||||||| |||||||| |||  | ||| ||||||||||| ||||||| |  || ||||||||    
T  24929575 ggaaacagcttatggcatgttcataaattgttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagt 24929476  T
Q  399 ttgaattgatttttatcttttgttatagaaatag 432  Q
    | || || | ||||||||||||||||||||||||    
T  24929475 tagacttta-ttttatcttttgttatagaaatag 24929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 11264372 - 11264301
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttata 382  Q
    ||||||||||||||| ||||| |||||||||||| |||||||| ||| ||| |  ||||||||||| |||||    
T  11264372 atgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttata 11264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 45128313 - 45128430
Alignment:
Q  315 catgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgattttta 413  Q
    ||||||||| ||||||| ||| |||||||| |||||||   || || ||| ||||||||||| ||||||| || || | || | ||||| |||| |||||    
T  45128313 catgtccatgagctgttttcagcttatttccataagctttataggacagtttatgaaaacaatttatagcttatatgagaataatttgatttga-tttta 45128411  T
Q  414 tcttttgttatagaaatag 432  Q
    |||||||||||||||||||    
T  45128412 tcttttgttatagaaatag 45128430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 432
Target Start/End: Original strand, 54325016 - 54325157
Alignment:
Q  291 aaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacat 389  Q
    |||||||||||||| || | |||| |||||||||||||||| |||  |||| || |||| ||| | |||||||  | |||||| |  ||||||| || ||    
T  54325016 aaaacttacggaaatagtttatgatatgtccataagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagcttatagcttatat 54325115  T
Q  390 aaaaacagtttgaattgatttttatcttttgttatagaaatag 432  Q
     |||||||||||| || | ||||||||||||| ||||||||||    
T  54325116 gaaaacagtttgacttta-ttttatcttttgtaatagaaatag 54325157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 4191730 - 4191689
Alignment:
Q  391 aaaacagtttgaattgatttttatcttttgttatagaaatag 432  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  4191730 aaaacagtttgactttatttttatcttttgttatagaaatag 4191689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 9316487 - 9316523
Alignment:
Q  145 tttggataaacagcttaattaagcactaatagcataa 181  Q
    ||||||||||||||||||||||||||| |||||||||    
T  9316487 tttggataaacagcttaattaagcacttatagcataa 9316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 29467613 - 29467681
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatg 369  Q
    ||||| ||| ||||||||||||||||||||| ||| |||||||| |||| ||| ||| |||||| ||||    
T  29467613 gaaacggcttatgacatgtccataagctgttttcagcttatttccataaactctctaggatagtgtatg 29467681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 30207570 - 30207686
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatt 409  Q
    ||||||||||  ||||||||| ||| |||||||| |||| ||| ||| | |||  ||||||||||| ||||||| || || |||||||||||| ||   |    
T  30207570 atgacatgtctgtaagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttgattt--at 30207667  T
Q  410 tttatcttttgttatagaa 428  Q
    ||||| |||||||||||||    
T  30207668 tttattttttgttatagaa 30207686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 429
Target Start/End: Original strand, 41097323 - 41097361
Alignment:
Q  391 aaaacagtttgaattgatttttatcttttgttatagaaa 429  Q
    |||||||||||| || |||||||||||||||||||||||    
T  41097323 aaaacagtttgacttaatttttatcttttgttatagaaa 41097361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 2996653 - 2996552
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagttt 400  Q
    ||||| || |||||||||||||||||| || |||||||||||  ||| |||| | | |||||  ||||||||||| ||||| | || ||||||||| |||    
T  2996653 aaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaattt 2996554  T
Q  401 ga 402  Q
    ||    
T  2996553 ga 2996552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 25487567 - 25487608
Alignment:
Q  314 acatgtccataagctgttgtcaacttatttctataagctccc 355  Q
    |||||||||||||||||| |||||||||||| ||||| ||||    
T  25487567 acatgtccataagctgttatcaacttatttccataagttccc 25487608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 41097245 - 41097290
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttcta 346  Q
    |||||| ||||||||||||||||||||| || ||||||||| ||||    
T  41097245 gaaacaactaatgacatgtccataagctattttcaacttatctcta 41097290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 431
Target Start/End: Complemental strand, 49219202 - 49219090
Alignment:
Q  319 tccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatttttatctt 417  Q
    |||||||| |||| ||| |||||||| |||| |||  || |||||| ||||||||||| ||||||| || || |||| | ||||| || | |||||| ||    
T  49219202 tccataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgacttta-ttttatatt 49219104  T
Q  418 ttgttatagaaata 431  Q
    ||||||||||||||    
T  49219103 ttgttatagaaata 49219090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 22684510 - 22684562
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||| |||| |||||||||||||||| ||| ||||||||| |||||||    
T  22684510 gaaatagcttatgatatgtccataagctgttttcagcttatttctttaagctc 22684562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 24160549 - 24160612
Alignment:
Q  366 tatgaaaacaagttatagct-acataaaaacagtttgaattgatttttatcttttgttatagaaa 429  Q
    ||||||||||| |||||||| |||| |||| |||||||||| || || |||||||||||||||||    
T  24160549 tatgaaaacaacttatagcttacatgaaaatagtttgaatttatatt-atcttttgttatagaaa 24160612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 46053581 - 46053617
Alignment:
Q  143 tttttggataaacagcttaattaagcactaatagcat 179  Q
    |||||||||||||||||||||||||| || |||||||    
T  46053581 tttttggataaacagcttaattaagcgcttatagcat 46053617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 3610723 - 3610860
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaa 393  Q
    |||| ||||||||||||||||||||||||||||  || ||| ||||||||||||||||| ||| |||||| || |||||||| ||||||| || |  |||    
T  3610723 cttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaaaacaacttatagcttataccaaa 3610822  T
Q  394 acagtttgaattgatttttatcttttgttatagaaatag 432  Q
    ||||||||  || | |||||||||||||| |||||||||    
T  3610823 acagtttgccttca-ttttatcttttgttgtagaaatag 3610860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 429
Target Start/End: Complemental strand, 28165178 - 28165044
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaa 393  Q
    |||| |||||||||| | ||| ||| ||||||||||| |||||||||||| |||||||| | |||||||  ||| || |||  ||||||| || || |||    
T  28165178 cttatggaaacagctcaagacctgttcataagctgttttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaa 28165079  T
Q  394 acagtttgaattgatttttatcttttgttatagaaa 429  Q
    ||| ||||| || | |||||||||||||||||||||    
T  28165078 acaatttgacttca-ttttatcttttgttatagaaa 28165044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 39771841 - 39771758
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    ||||| || |||| |||||||||||||||| |||||||||||| || ||| | ||||||||  |||||||||||| ||||||||    
T  39771841 aaacaacttatgatatgtccataagctgttttcaacttatttccattagcactctatgataacctatgaaaacaacttatagct 39771758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 15075088 - 15075206
Alignment:
Q  315 catgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct-acataaaaacagtttgaattgattttta 413  Q
    ||||| ||||||||||| | | |||||||| |||||||| ||| | |||| |||||||| || ||||| || | ||||||| |||||  ||| | |||||    
T  15075088 catgtacataagctgtttttagcttatttccataagctctctaaggtagtttatgaaaataacttataacttatataaaaatagttttgattaaatttta 15075187  T
Q  414 tcttttgttatagaaatag 432  Q
    |||||||||||||||||||    
T  15075188 tcttttgttatagaaatag 15075206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 27626106 - 27626164
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||||||||| ||||||||||||||| ||||| | |||||||||| ||||||||    
T  27626106 cttatggaaacagcttatgacatgtccataaactgttttaaacttatttccataagctc 27626164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 941630 - 941569
Alignment:
Q  292 aaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    ||||||| ||||||| || ||||||||||||||||| ||| | || ||||||||||||||||    
T  941630 aaacttatggaaacaacttatgacatgtccataagcagttttaaatttatttctataagctc 941569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 39551536 - 39551588
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagct 352  Q
    ||||||| || |||||||||||||||| |||||||| |||||||| |||||||    
T  39551536 ggaaacaacttatgacatgtccataaggtgttgtcagcttatttccataagct 39551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 39539765 - 39539812
Alignment:
Q  296 ttacggaaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    ||||||||||| || ||||||||||||||||||||| ||| |||||||    
T  39539765 ttacggaaacaacttatgacatgtccataagctgttttcagcttattt 39539812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 27389308 - 27389342
Alignment:
Q  196 tatcatataagtgtttatgtatgagctatttctat 230  Q
    |||||||||||||||||||||| ||||||||||||    
T  27389308 tatcatataagtgtttatgtataagctatttctat 27389342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 44151479 - 44151553
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||||||||||||| |||| ||| |||||||| |||||||    | |||||| ||||||||||| ||||||||    
T  44151479 atgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagct 44151553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 45859510 - 45859587
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaa 373  Q
    |||||||||||| |  ||||||||| |||| | |||| ||| |||||||||||||||||   |||||||||||||||||    
T  45859510 cttacggaaacaacatatgacatgttcata-gttgttttcagcttatttctataagctcttcatgatagtctatgaaaa 45859587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 3468696 - 3468623
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaa 373  Q
    ||||||| ||||||||||||||||||| ||||  ||||||||||| | ||| || ||| |||||  ||||||||    
T  3468696 ggaaacaactaatgacatgtccataagttgtttccaacttatttccacaagttctctaggatagattatgaaaa 3468623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 29290420 - 29290371
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttc 344  Q
    |||| ||||||| || ||||||||||||||||||||| ||||| ||||||    
T  29290420 cttatggaaacaacttatgacatgtccataagctgttttcaacatatttc 29290371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 45078349 - 45078316
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttc 344  Q
    ||||||||||||||||||||| ||||||||||||    
T  45078349 atgacatgtccataagctgttttcaacttatttc 45078316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 28076640 - 28076600
Alignment:
Q  296 ttacggaaacagctaatgacatgtccataagctgttgtcaa 336  Q
    ||||||||||| ||||||||||||||||||| |||| ||||    
T  28076640 ttacggaaacaactaatgacatgtccataagttgttttcaa 28076600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 28702640 - 28702676
Alignment:
Q  145 tttggataaacagcttaattaagcactaatagcataa 181  Q
    |||||||||||| |||||||||||||| |||||||||    
T  28702640 tttggataaacaacttaattaagcacttatagcataa 28702676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 3738151 - 3738092
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatg 359  Q
    |||||||||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||    
T  3738151 ggaaacagcttatgacatgtccataagctgctttcaacttatttcaataagctgcctatg 3738092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 9667973 - 9668026
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    ||||||| || ||||||||||||||||||||| |||||||||||| ||||||||    
T  9667973 ggaaacaacttatgacatgtccataagctgttttcaacttatttccataagctc 9668026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 283175 - 283092
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||||| ||||||||||||||| || || ||| |||||||||||||||| || | ||||| ||||| |||||  ||||||||    
T  283175 aaacagcttatgacatgtccataaactattttcagcttatttctataagcttccgaagatagcctatgcaaacagattatagct 283092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 4246492 - 4246417
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    ||||||| || ||||||||||||||||||||| ||||||||||| |||| |||| | || ||||  ||||||||||    
T  4246492 ggaaacaactcatgacatgtccataagctgttttcaacttatttttatatgctctccataatagcttatgaaaaca 4246417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 31583759 - 31583709
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagct 352  Q
    |||| |||||||||||||||||||| |||| |||||||||||| |||||||    
T  31583759 aaaccgctaatgacatgtccataagttgttttcaacttatttccataagct 31583709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 2455927 - 2455839
Alignment:
Q  265 cataaacagttgagagattgtatagaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    ||||| || ||| |||||||| ||||| | |||| ||||||| || |||||||| |||||| || || |||||||||||| ||||||||    
T  2455927 cataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctc 2455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 31624179 - 31624087
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||| | |||||||| ||||||||| ||||||||||| |||||||||||  ||||  || | | ||||| |||||||||||  ||||||||    
T  31624179 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagct 31624087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 6647469 - 6647394
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    ||||| |||| ||||||||| |||||| |||| |||||||||||  |||||||| ||| |||||  ||||||||||    
T  6647469 ggaaatagcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaaca 6647394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 2112281 - 2112199
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatag 383  Q
    |||||| || ||||||||| |||||| |||| ||   |||||||||||||| | ||| |||||| ||||||||||| ||||||    
T  2112281 gaaacaacttatgacatgttcataagttgttttcggtttatttctataagcactctaagatagtttatgaaaacaacttatag 2112199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 353
Target Start/End: Original strand, 2732186 - 2732288
Alignment:
Q  251 agcttgcctacttacataaacagttgagagattgtatagaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataag 350  Q
    |||||| ||||| |||||| || ||| |||| ||| | ||||| |||| |||||||||||||||  |||||||||  |||| ||| |||| ||||| |||    
T  2732186 agcttgtctactgacataagcacttgtgagactgtttggaaaagcttatggaaacagctaatgatctgtccataaattgttttcagcttacttctagaag 2732285  T
Q  351 ctc 353  Q
    |||    
T  2732286 ctc 2732288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 7148753 - 7148695
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||||||| || ||||| |||||||||||| || |||||||||||  ||||||||    
T  7148753 cttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagctc 7148695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 34939831 - 34939777
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataa 349  Q
    ||||||||||||||| |||||||||||||||  |||| ||| |||||||| ||||    
T  34939831 cttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataa 34939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 1403038 - 1402946
Alignment:
Q  340 atttctataagctccctatgatagtctatgaaaacaagttatagct-acataaaaacagtttgaattgatttttatcttttgttatagaaatag 432  Q
    ||||||||||| || | |||||||  ||||||||||| |||||||| | || |||| ||||| | || ||||| ||||||||||||||||||||    
T  1403038 atttctataagatctccatgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttatttt-atcttttgttatagaaatag 1402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 2034434 - 2034487
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||||| ||||||| ||||||||||||| ||| ||||||||  |||||||    
T  2034434 ggaaacagcttatgacatttccataagctgttttcagcttatttcattaagctc 2034487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 432
Target Start/End: Original strand, 4247717 - 4247754
Alignment:
Q  393 aacagtttgaattgatttttatcttttgttatagaaatag 432  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  4247717 aacagtttgaatt--tttttatcttttgttatagaaatag 4247754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 8420186 - 8420238
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||| |||||||||||| ||||| || |||||||||||| ||||||||    
T  8420186 gaaatagcttatgacatgtccacaagctattttcaacttatttccataagctc 8420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 432
Target Start/End: Complemental strand, 14295586 - 14295456
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct-acataaaaacagttt 400  Q
    |||||||| |||| ||||| |||||||||| ||| |||| ||||| |||||| | | |||||  || |||||||  |||||||| | || ||||||||||    
T  14295586 aaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagttt 14295487  T
Q  401 gaattgatttttatcttttgttatagaaatag 432  Q
    || || ||||| ||||||||||||||||||||    
T  14295486 gactttatttt-atcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 40205064 - 40205138
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaa 376  Q
    |||||||| || |||||||||||| ||||| ||| ||||||||||||||||| | | |||||  |||||||||||    
T  40205064 aaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaa 40205138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 432
Target Start/End: Complemental strand, 34690943 - 34690824
Alignment:
Q  312 tgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagctacataaaaacagtttgaattgatttt 411  Q
    ||||||||||||||| |||| || ||||||||| |||||||| | | ||| |  ||||| ||||| ||||||||| || |||  | | ||| || | |||    
T  34690943 tgacatgtccataagttgttatcgacttatttccataagctctccaagatggcttatgagaacaacttatagctatatgaaagtattgtgacttta-ttt 34690845  T
Q  412 tatcttttgttatagaaatag 432  Q
    |||||||||||||||||||||    
T  34690844 tatcttttgttatagaaatag 34690824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 41957434 - 41957482
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    ||||||||||||||| |||||||||||||||| |||| ||| |||||||    
T  41957434 cttacggaaacagcttatgacatgtccataagttgttttcatcttattt 41957482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 14331470 - 14331396
Alignment:
Q  278 gagattgtatagaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||| | |||||||||||  |||||||| ||||||||||||||||||| | ||| |||||||  ||||||||    
T  14331470 gagattgtttggaaaaacttaca-aaacagcttatgacatgtccataagctgatttcagcttattttcataagctc 14331396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 17369425 - 17369480
Alignment:
Q  298 acggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||||||| |||||||||| ||||| |||| |||  ||||||||||||||||    
T  17369425 acggaaacagcttatgacatgtctataagttgttttcagattatttctataagctc 17369480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 11457185 - 11457128
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| ||||||| || ||||||||||||||||||||| |||  ||||||||||||||||    
T  11457185 cttatggaaacaacttatgacatgtccataagctgtt-tcatattatttctataagctc 11457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 19369400 - 19369342
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||| ||||| ||||||||||  ||||||||| |||| ||||||||||||||||    
T  19369400 cttatggaagcagctcatgacatgtctgtaagctgttttcaatttatttctataagctc 19369342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 431
Target Start/End: Original strand, 37690635 - 37690756
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatag-tctatgaaaacaagttatagct-acataaaaacagtttgaattgat 408  Q
    |||||||||  |||||||||| ||| |||||||| |||||||| | || |||  | ||||||||||| |||||||| | || |||||  ||||| |||||    
T  37690635 atgacatgttaataagctgttttcagcttatttccataagctctccataataactttatgaaaacaacttatagcttatatgaaaactttttgatttgat 37690734  T
Q  409 ttttatcttttgttatagaaata 431  Q
    ||| ||||||| |||||||||||    
T  37690735 ttt-atcttttattatagaaata 37690756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 10303875 - 10303826
Alignment:
Q  303 aacagctaatgacatgtccataagctgttgtcaacttatttctataagct 352  Q
    |||| ||||||||||||||||||| |||||||| |||||||  |||||||    
T  10303875 aacatctaatgacatgtccataagttgttgtcagcttattttcataagct 10303826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 21768187 - 21768228
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    |||||||| |||||||||||||| |||||| |||||||||||    
T  21768187 aaacagcttatgacatgtccatacgctgttttcaacttattt 21768228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 432
Target Start/End: Original strand, 36542270 - 36542402
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagt 398  Q
    ||||||| || |||||||||||| |||||||| | |||||||||| | |||||| ||| |||||  |||| || ||  ||||||| || || | ||||||    
T  36542270 ggaaacatcttatgacatgtccagaagctgtttttaacttatttccacaagctctctaggatagcttatggaatcagcttatagcttatatgagaacagt 36542369  T
Q  399 ttgaattgatttttatcttttgttatagaaatag 432  Q
    |||| |||| |  |||| ||||||||||||||||    
T  36542370 ttgatttga-taatatcgtttgttatagaaatag 36542402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 431
Target Start/End: Original strand, 18704025 - 18704154
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct-acataaaaacagtt 399  Q
    |||||| || || ||||||| ||||| |||| ||| |||||||| ||||| ||  | | ||||  ||||||||||| |||||||| | ||||||| || |    
T  18704025 gaaacaacttataacatgtctataagttgttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttatataaaaatagct 18704124  T
Q  400 tgaattgatttttatcttttgttatagaaata 431  Q
    ||| || ||||  |||||||||||||||||||    
T  18704125 tgactttattt--atcttttgttatagaaata 18704154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 28350907 - 28350947
Alignment:
Q  392 aaacagtttgaattgatttttatcttttgttatagaaatag 432  Q
    ||||||||||| |||||||||||||||| || |||||||||    
T  28350907 aaacagtttgatttgatttttatcttttattctagaaatag 28350947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 375
Target Start/End: Original strand, 30923886 - 30923961
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    |||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||| ||| |||||  ||||||||||    
T  30923886 ggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaaca 30923961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 36646385 - 36646452
Alignment:
Q  315 catgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttata 382  Q
    ||||||||||||||||| ||| ||||||||||||| ||| ||| |||||  |||||||||||||||||    
T  36646385 catgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaacaagttata 36646452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 429
Target Start/End: Complemental strand, 43115138 - 43115010
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagt 398  Q
    ||||||| || |||||||||||||||  |||| ||| |||||||| |||||||| | ||||||||  |||||||||| ||||||| || || ||||||||    
T  43115138 ggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatagttcatgaaaacaacttatagcttatat-aaaacagt 43115040  T
Q  399 ttgaattgatttttatcttttgttatagaaa 429  Q
       |||| | |||||||||||||||||||||    
T  43115039 caaaattta-ttttatcttttgttatagaaa 43115010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 20192595 - 20192647
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||    
T  20192595 gaaacagcttatgacatgtccataagctgttttcaactcatttccataagctc 20192647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 31010483 - 31010421
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatag 363  Q
    |||||| || ||||||||||||||||||||| ||| |||| ||| |||||||| |||||||||    
T  31010483 gaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctctatgatag 31010421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 53848063 - 53848124
Alignment:
Q  312 tgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaa 373  Q
    |||||||||||||||||||| ||  ||||||||||||||||| ||  |||||| ||||||||    
T  53848063 tgacatgtccataagctgttttcggcttatttctataagctctctgggatagtttatgaaaa 53848124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 37273221 - 37273141
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    |||| ||||||| || |||||||||||||||| |||| |||||||||||| ||||| || | | |||||  ||||||||||    
T  37273221 cttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 2152168 - 2152238
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaa 372  Q
    ||||| || ||||||||| | ||||||||| ||||||| ||||||||||||| | | |||||| |||||||    
T  2152168 aaacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctctcaaggatagtttatgaaa 2152238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 343
Target Start/End: Complemental strand, 5391968 - 5391918
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    |||||| | |||||||| ||||||||| ||||||||||| |||||||||||    
T  5391968 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttattt 5391918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 432
Target Start/End: Complemental strand, 38462352 - 38462231
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatt 409  Q
    ||||| || ||||||| |||| ||| |||||||| |||||||  ||  |||||  ||||||||||  ||||||| || || |||||||||||| || |||    
T  38462352 atgacttgaccataagttgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactttatt 38462253  T
Q  410 tttatcttttgttatagaaatag 432  Q
    || |||||||| |||||||||||    
T  38462252 tt-atcttttggtatagaaatag 38462231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 54180769 - 54180843
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    ||||||||| |||||||||||||||| |||| | | ||||||| ||||||||| | || ||||  ||||||||||    
T  54180769 gaaacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaaca 54180843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 1217783 - 1217828
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaactta 340  Q
    ||||||||||||||| |||||||||||||||| |||| ||| ||||    
T  1217783 cttacggaaacagcttatgacatgtccataagttgttttcatctta 1217828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 1810064 - 1809983
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaa 376  Q
    |||||||||||| || ||||||||||||| || |||| ||  |||||||||||||| | | || |||||  |||||||||||    
T  1810064 cttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctataagtttcgtaggatagcttatgaaaacaa 1809983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 48048981 - 48049046
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaa 376  Q
    ||||||||||||||||||||| ||| |||||||| |||| ||||| | |||||   ||||||||||    
T  48048981 atgacatgtccataagctgttttcagcttatttccataacctccccaagatagctaatgaaaacaa 48049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 53762384 - 53762425
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    |||||||| ||||||||| ||||||||||| |||||||||||    
T  53762384 aaacagcttatgacatgttcataagctgttttcaacttattt 53762425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 3044248 - 3044300
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||| || ||||||||| ||||||||||| |||||||||||  ||||||||    
T  3044248 gaaacaacttatgacatgttcataagctgttttcaacttattttcataagctc 3044300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 13804848 - 13804816
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttattt 343  Q
    ||||||||||||||||||||| |||||||||||    
T  13804848 atgacatgtccataagctgttttcaacttattt 13804816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 20874487 - 20874451
Alignment:
Q  145 tttggataaacagcttaattaagcactaatagcataa 181  Q
    |||||||||||| |||||||||||||| |||||||||    
T  20874487 tttggataaacaacttaattaagcacttatagcataa 20874451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 31337381 - 31337413
Alignment:
Q  291 aaaacttacggaaacagctaatgacatgtccat 323  Q
    |||||||| ||||||||||||||||||||||||    
T  31337381 aaaacttatggaaacagctaatgacatgtccat 31337413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 41724303 - 41724251
Alignment:
Q  291 aaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    |||||||| ||||||| || |||||||||||||||| |||| ||| |||||||    
T  41724303 aaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 431
Target Start/End: Original strand, 1939331 - 1939451
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct--acataaaaacagtttgaattgat 408  Q
    ||||||||||||||||||||| |||||||||||| |||||||| | |  ||||  ||||||||| ||||||||||  | || |||| ||||| | || |     
T  1939331 atgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaac-agttatagctcaatatgaaaatagtttcacttta- 1939428  T
Q  409 ttttatcttttgttatagaaata 431  Q
    |||||||||||||||||||||||    
T  1939429 ttttatcttttgttatagaaata 1939451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 9878665 - 9878802
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaa 393  Q
    |||| ||||||| || |||||||||||||||| |||| || ||||||||||  |||||| |   |||||   |||||||||| ||||||| ||  |||||    
T  9878665 cttatggaaacaacttatgacatgtccataagttgttttcgacttatttcttcaagctctccgggatagcgaatgaaaacaacttatagcatatgtaaaa 9878764  T
Q  394 acagtttgaattgatttttatcttttgttatagaaatag 432  Q
    | ||||||| || | ||||||||||||||||||||||||    
T  9878765 atagtttgagttta-ttttatcttttgttatagaaatag 9878802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 430
Target Start/End: Complemental strand, 10285931 - 10285813
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatt 409  Q
    ||||||||||||||||||||| |||||||||||| ||||| || ||||| |||  |||| |||| | ||||||| || || ||| |||||||| || |||    
T  10285931 atgacatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaacgacttatagcttatatgaaaccagtttgactt-att 10285833  T
Q  410 tttatcttttgttatagaaat 430  Q
    ||| ||||||| |||||||||    
T  10285832 ttt-tcttttggtatagaaat 10285813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 28933881 - 28933774
Alignment:
Q  325 agctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatttttatcttttgtta 423  Q
    ||||||| ||||||||||||||| ||||| ||| |||||  ||||||||||| ||||| | || || |||| | ||||| |||| |||||||||||||||    
T  28933881 agctgttttcaacttatttctatcagctctctaggatagcttatgaaaacaatttataacttaaatgaaaataatttgatttga-ttttatcttttgtta 28933783  T
Q  424 tagaaatag 432  Q
    || ||||||    
T  28933782 tataaatag 28933774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 32821890 - 32821806
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||| || ||||||||||||||||||||| |||  ||||||||||||||||  || |||||  ||||||||||  ||||||||    
T  32821890 gaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagtttatagct 32821806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 34652025 - 34652077
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||| || ||||||||||||||||||||| |||||||||||| ||||||||    
T  34652025 gaaacaacttatgacatgtccataagctgttttcaacttatttccataagctc 34652077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 420
Target Start/End: Complemental strand, 33942221 - 33942112
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatt 409  Q
    ||||||||| ||||||||||| ||| || ||||  || ||||| ||||||| |  ||||||||||| ||||||| ||||| |||||||||||| || | |    
T  33942221 atgacatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaacttatagcttacatgaaaacagtttgacttta-t 33942123  T
Q  410 tttatcttttg 420  Q
    |||||||||||    
T  33942122 tttatcttttg 33942112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 1647331 - 1647255
Alignment:
Q  287 tagaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatag 363  Q
    ||||| |||||| | |||||||| ||||||||  ||||||||||| ||| |||||||| |||||||| |||| ||||    
T  1647331 tagaagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctctataatag 1647255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 10143197 - 10143123
Alignment:
Q  357 atgatagtctatgaaaacaagttatagct-acataaaaacagtttgaattgatttttatcttttgttatagaaata 431  Q
    |||||||  |||||||| || |||||||| | ||||||||||||||| || ||||| |||||||||||||||||||    
T  10143197 atgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaatttt-atcttttgttatagaaata 10143123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 1742015 - 1742152
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaa 393  Q
    |||| ||||||| || ||||||||| |||||||| |  |||||||||||| |||| |||   |||||||  ||||||||||  ||||| | || ||| ||    
T  1742015 cttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatcttatatataa 1742114  T
Q  394 acagtttgaattgatttttatcttttgttatagaaatag 432  Q
    | ||||||| || | |||||| |||||||||||||||||    
T  1742115 agagtttgacttca-ttttatattttgttatagaaatag 1742152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 9478224 - 9478258
Alignment:
Q  196 tatcatataagtgtttatgtatgagctatttctat 230  Q
    |||||||||||||||||||||| ||||||||||||    
T  9478224 tatcatataagtgtttatgtataagctatttctat 9478258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 11393558 - 11393520
Alignment:
Q  140 ccttttttggataaacagcttaattaagcactaatagca 178  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  11393558 ccttgtttggataaacagcttaattaagcacttatagca 11393520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 11410219 - 11410181
Alignment:
Q  140 ccttttttggataaacagcttaattaagcactaatagca 178  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  11410219 ccttgtttggataaacagcttaattaagcacttatagca 11410181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 43985295 - 43985238
Alignment:
Q  296 ttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||||| || |||||||||||||||||| || ||||||| |||| ||||||||    
T  43985295 ttactgaaacaacttatgacatgtccataagcttttttcaacttgtttccataagctc 43985238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 750422 - 750358
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    ||||||||||||||| |||||  |||||| | || |||||||| |||||||||  ||||||||||    
T  750422 atgacatgtccataaactgtttgcaacttgtctccataagctctctatgatagcttatgaaaaca 750358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 787421 - 787373
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttat 341  Q
    |||||| | |||||||| ||||||||||||||||||||| ||| |||||    
T  787421 aacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 10198479 - 10198531
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatag 363  Q
    ||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||    
T  10198479 atgacatgttcataagctgttgtcagcttatttccataatctctctaggatag 10198531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 13864577 - 13864609
Alignment:
Q  198 tcatataagtgtttatgtatgagctatttctat 230  Q
    |||||||||||||||||||| ||||||||||||    
T  13864577 tcatataagtgtttatgtataagctatttctat 13864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 41851147 - 41851179
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagc 327  Q
    ||||||||||||||| |||||||||||||||||    
T  41851147 cttacggaaacagcttatgacatgtccataagc 41851179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 43635283 - 43635251
Alignment:
Q  149 gataaacagcttaattaagcactaatagcataa 181  Q
    ||||||||||||||||||||||| |||||||||    
T  43635283 gataaacagcttaattaagcacttatagcataa 43635251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 43808499 - 43808531
Alignment:
Q  194 cgtatcatataagtgtttatgtatgagctattt 226  Q
    |||||||||||||||||||||||| ||||||||    
T  43808499 cgtatcatataagtgtttatgtataagctattt 43808531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 26184834 - 26184777
Alignment:
Q  296 ttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||||||||| ||||||||||||||||||||| |||  ||||||| ||||||||    
T  26184834 ttacggaaacagcttatgacatgtccataagctgttttcagattatttccataagctc 26184777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 28689433 - 28689492
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagct 352  Q
    ||||||||||||||||| |||||||||||||||| |||| ||| |||||||  |||||||    
T  28689433 aacttacggaaacagcttatgacatgtccataagttgttttcagcttattttcataagct 28689492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 35925779 - 35925696
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaa 376  Q
    |||||| | |||||||| ||||||||| ||||||||||| |||||||||||| |||| ||| | |||||||  |||| ||||||    
T  35925779 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttatggaaacaa 35925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 6231804 - 6231854
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataag 350  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||    
T  6231804 ggaaacaactaatgacatgtccataaactgttttcagcttatttctataag 6231854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 30257754 - 30257680
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    ||||||||| ||||||||||| ||| ||||||||||||||| | | | |||||| ||||||||||| ||| ||||    
T  30257754 atgacatgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagct 30257680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 432
Target Start/End: Original strand, 36151504 - 36151625
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatt 409  Q
    ||||||||||||||| ||||| |||||||||||  |||||||| ||| ||| || || |||||||| ||||| | || |  |||||| ||||| || | |    
T  36151504 atgacatgtccataacctgttttcaacttattttcataagctcactaggattgtttacgaaaacaatttataacttatacgaaaacaatttgacttta-t 36151602  T
Q  410 tttatcttttgttatagaaatag 432  Q
    ||||||||||||||| |||||||    
T  36151603 tttatcttttgttattgaaatag 36151625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 11695943 - 11695858
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||||| | ||||||||||||||||||||| |||||||||||  |||||||  | |  ||||||||| ||||||  ||||||||    
T  11695943 ggaaacagtttatgacatgtccataagctgttttcaacttattttcataagctttccagaatagtctataaaaacattttatagct 11695858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 34380532 - 34380475
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagct 352  Q
    ||||||||||||| | ||||||| ||||||||||||| ||| |||||||| |||||||    
T  34380532 cttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 34380475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 32515424 - 32515492
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatag 363  Q
    |||| |||||||||  |||||||||| ||||| |||| ||||||||| ||||||||||| | |||||||    
T  32515424 cttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatag 32515492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 39347956 - 39348040
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||||| |||| |||||||||||| |||| ||| |||||||| |||||||    | |||||| ||||||||||| ||||||||    
T  39347956 gaaacagccaatggcatgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagct 39348040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 27140560 - 27140497
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatag 363  Q
    |||||||||| |||||||||||||||| |||| ||| |||||||  |||||||| | |||||||    
T  27140560 ggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatag 27140497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 27887112 - 27887191
Alignment:
Q  306 agctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||| |||||||||||||||  |||| | | ||||||| |||| |||| | |||||||| ||||||||||| ||||||||    
T  27887112 agcttatgacatgtccataaattgtttttagcttatttttatatgctctccatgatagtttatgaaaacaacttatagct 27887191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 29723571 - 29723528
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttattt 343  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||    
T  29723571 ggaaacagcttatgacatgtccataaactgttttcaacttattt 29723528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 29794112 - 29794073
Alignment:
Q  142 ttttttggataaacagcttaattaagcactaatagcataa 181  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  29794112 ttttttggataaacagcttaattaagcgcttatagcataa 29794073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 425
Target Start/End: Complemental strand, 30371229 - 30371105
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtc-tatgaaaacaagttatagc-tacataaaaacagt 398  Q
    |||||| ||||||||||||||||||| |||| ||| |||||||| ||| |||| | |  || ||| ||||||||||| ||||||| || || |||||| |    
T  30371229 gaaacaactaatgacatgtccataagttgttttcagcttatttcaatacgctctccaaaat-gtcttatgaaaacaacttatagcttatatgaaaacaat 30371131  T
Q  399 ttgaattgatttttatcttttgttata 425  Q
    |||| || | |||||||||||||||||    
T  30371130 ttgagttta-ttttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 37811941 - 37811859
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    |||||| | |||||||| ||||||||| ||||| ||||| |||||||||||| || ||||| | ||||| |  ||||||||||    
T  37811941 aacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggcttatgaaaaca 37811859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 4622164 - 4622044
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagtttgaattgatt 409  Q
    ||||||||||||||||||||| | | |||||||  | |||||| | | |||||  |||| |||||  ||||||| || || |||| |||||||||| | |    
T  4622164 atgacatgtccataagctgtttttagcttattttcacaagctctccaagatagcatatggaaacagcttatagcttatatgaaaagagtttgaattca-t 4622066  T
Q  410 tttatcttttgttatagaaata 431  Q
    || |||||||||||||||||||    
T  4622065 ttgatcttttgttatagaaata 4622044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 351
Target Start/End: Complemental strand, 15581378 - 15581285
Alignment:
Q  258 ctacttacataaacagttgagagattgtatagaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagc 351  Q
    ||||| |||||| || ||| |||||||| | ||| | || | ||||||| || |||||||||| |||||||||| ||| | |||||||||||||    
T  15581378 ctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttcagcctatttctataagc 15581285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 27963361 - 27963434
Alignment:
Q  303 aacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaa 376  Q
    ||||||| |||||||||||||||| |||| | | ||||||| ||||||||| | || ||||  |||||||||||    
T  27963361 aacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacaa 27963434  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 29665939 - 29665898
Alignment:
Q  140 ccttttttggataaacagcttaattaagcactaatagcataa 181  Q
    |||| |||||||||||||||||||||| |||| |||||||||    
T  29665939 ccttgtttggataaacagcttaattaaacacttatagcataa 29665898  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 432
Target Start/End: Original strand, 30259487 - 30259607
Alignment:
Q  313 gacatgtccataagctgttgtcaacttatttctataagctccctatgatag-tctatgaaaacaagttatagc-tacataaaaacagtttgaattgattt 410  Q
    |||||||| ||||  |||| |||||||||||| |||||||| | ||||||| | |||| |||||  ||||||| || || ||| |||||||| || | ||    
T  30259487 gacatgtcaataaattgttttcaacttatttccataagctctccatgatagctttatgcaaacagcttatagcttatatcaaagcagtttgacttta-tt 30259585  T
Q  411 ttatcttttgttatagaaatag 432  Q
    |||| |||||||||||||||||    
T  30259586 ttatattttgttatagaaatag 30259607  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 33108594 - 33108663
Alignment:
Q  284 gtatagaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||| |||||| | ||||| || ||| |||| ||||||| |||| |||||||||||| ||||||||    
T  33108594 gtatagaagaacttatgaaaacaactcatgccatgaccataagttgttttcaacttatttccataagctc 33108663  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 39270415 - 39270488
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    ||||||||  || ||||||||||||||||| |||||||||||  ||| |||| ||||| |||  ||||||||||    
T  39270415 aaacagcttttggcatgtccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaaca 39270488  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 12564864 - 12564964
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagc-tacataaaaacagttt 400  Q
    |||||||||| | ||||||||||||||||| ||| ||||||||  ||||| |   | |||||  ||||||||||| ||||||| || || ||||||||||    
T  12564864 aaacagctaacgccatgtccataagctgttttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaaaacagttt 12564963  T
Q  401 g 401  Q
    |    
T  12564964 g 12564964  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 31294528 - 31294592
Alignment:
Q  319 tccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatag 383  Q
    |||||||||| || |||||||||||  |||||||| |||||||||| ||  ||||||| ||||||    
T  31294528 tccataagctcttttcaacttattttcataagctctctatgatagtttacaaaaacaacttatag 31294592  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 37842336 - 37842428
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    |||||| | ||||| |||||||||||| ||||||| ||| ||| ||||||| |||||| ||   | |||||  ||||||||||| ||||||||    
T  37842336 aacttatgaaaacatctaatgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatgaaaacaacttatagct 37842428  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 44031992 - 44032040
Alignment:
Q  305 cagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||||||||||||||||||||||| || ||| || ||||| ||||||||    
T  44031992 cagctaatgacatgtccataagctattttcagctaatttccataagctc 44032040  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 45394204 - 45394148
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataa 349  Q
    |||||| | |||||||| |||| ||||| |||||||||| |||||||||||| ||||    
T  45394204 aacttaagaaaacagcttatgagatgtcgataagctgttttcaacttatttcaataa 45394148  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 5088939 - 5088881
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||||||| | || |||||||||||||||||| |||||||||||| ||||||||    
T  5088939 cttatggaaacagtttataacatgtccataagctgttttcaacttatttcaataagctc 5088881  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 39551197 - 39551282
Alignment:
Q  300 ggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaagttatagct 385  Q
    ||||||| || |||||||||||| |||||||| | ||||||||| ||||||||| | | || ||  ||||||||||| ||||||||    
T  39551197 ggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttatagct 39551282  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 3254319 - 3254259
Alignment:
Q  288 agaaaaacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctata 348  Q
    |||| |||||| | |||||||| ||||||||| ||||||||||| ||| ||||||||||||    
T  3254319 agaagaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatttctata 3254259  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 12361273 - 12361221
Alignment:
Q  301 gaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctc 353  Q
    |||| |||| ||||||||||||||||||||| |||||||||||| || |||||    
T  12361273 gaaatagcttatgacatgtccataagctgttttcaacttatttccattagctc 12361221  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 10383974 - 10383892
Alignment:
Q  293 aacttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaaca 375  Q
    |||||| | |||||||| ||||||| | |||||||||||  || |||||||| ||||||||  ||||||||| || |||||||    
T  10383974 aacttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataagctctatatgatagtttacgaaaaca 10383892  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 14949937 - 14949899
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataa 349  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  14949937 atgacatgtccataagctgttttcagcttatttctataa 14949899  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 25869265 - 25869327
Alignment:
Q  311 atgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaa 373  Q
    |||||||||||||||| |||| ||| |||||||| |||| ||| | ||||||| |||||||||    
T  25869265 atgacatgtccataagttgttttcagcttatttccataaactctccatgatagcctatgaaaa 25869327  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 7008507 - 7008548
Alignment:
Q  140 ccttttttggataaacagcttaattaagcactaatagcataa 181  Q
    ||||||||||||||||| ||||||||||| || |||||||||    
T  7008507 ccttttttggataaacaacttaattaagcgcttatagcataa 7008548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 9835890 - 9835938
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataag 350  Q
    |||||||| ||||||||| ||||||||||| ||| |||||||| |||||    
T  9835890 aaacagcttatgacatgttcataagctgttttcatcttatttccataag 9835938  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 306413 - 306332
Alignment:
Q  295 cttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataagctccctatgatagtctatgaaaacaa 376  Q
    |||| |||||||||| |||||||| |||||||||||| ||| |||| ||  |||||||| ||| |||||  |||||||||||    
T  306413 cttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaa 306332  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 5039 - 4989
Alignment:
Q  302 aaacagctaatgacatgtccataagctgttgtcaacttatttctataagct 352  Q
    |||||||| ||||||||||||||||||| | | | ||||||||||||||||    
T  5039 aaacagcttatgacatgtccataagctgattttagcttatttctataagct 4989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 98624 - 98677
Alignment:
Q  296 ttacggaaacagctaatgacatgtccataagctgttgtcaacttatttctataa 349  Q
    ||||| ||| |||| ||||||||| ||||||||||| |||||||||||| ||||    
T  98624 ttacgaaaatagcttatgacatgttcataagctgttttcaacttatttcaataa 98677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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