View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8829_low_2 (Length: 352)

Name: NF8829_low_2
Description: NF8829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8829_low_2
NF8829_low_2
[»] chr5 (2 HSPs)
chr5 (84-338)||(33560262-33560516)
chr5 (3-51)||(33560214-33560262)
[»] chr2 (28 HSPs)
chr2 (88-338)||(39389615-39389865)
chr2 (110-333)||(39136598-39136821)
chr2 (110-340)||(39390453-39390683)
chr2 (99-337)||(39390918-39391147)
chr2 (88-213)||(38792909-38793034)
chr2 (88-234)||(39221633-39221779)
chr2 (134-338)||(39415896-39416100)
chr2 (125-338)||(39222300-39222513)
chr2 (151-337)||(39390246-39390432)
chr2 (151-338)||(39221180-39221358)
chr2 (283-338)||(39458699-39458754)
chr2 (119-185)||(39415161-39415227)
chr2 (140-212)||(39137291-39137363)
chr2 (14-62)||(39193077-39193125)
chr2 (14-62)||(39198757-39198805)
chr2 (151-235)||(39390138-39390222)
chr2 (282-337)||(39192751-39192806)
chr2 (282-337)||(39198431-39198486)
chr2 (20-63)||(39390697-39390740)
chr2 (103-213)||(38792672-38792782)
chr2 (137-211)||(39136877-39136951)
chr2 (89-215)||(39451413-39451539)
chr2 (104-189)||(39415283-39415368)
chr2 (110-211)||(39473931-39474032)
chr2 (133-213)||(38792443-38792523)
chr2 (294-338)||(39137445-39137489)
chr2 (110-174)||(39422180-39422244)
chr2 (110-214)||(39451686-39451790)
[»] chr7 (3 HSPs)
chr7 (110-333)||(19806959-19807182)
chr7 (124-211)||(19807225-19807312)
chr7 (294-338)||(19807395-19807439)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 84 - 338
Target Start/End: Original strand, 33560262 - 33560516
Alignment:
Q  84 aaaaccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatgga 183  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||    
T  33560262 aaaaccaaatgaaggagcatgtattgaaacaggagcattgagaaagccaaatgaaggagcttcagtcaaaagagaagcaacttgaaggccgattgaatga 33560361  T
Q  184 gcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattg 283  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||| | ||| | ||| | |  ||||||||||||| ||| ||||||||||||||    
T  33560362 gcatgagtcaaaggagaaggaatttgaaggctgtgtgaaggagatggaatataaagcgaagcatttcgaaagcatggtggaggagctcaaatcaaaattg 33560461  T
Q  284 aggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 338  Q
    ||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  33560462 aggtcgttgaaagaacaacttcaagaacttgattctaaagagaagcaacttgatg 33560516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33560214 - 33560262
Alignment:
Q  3 aacataaagaccgggtgaaggagttggaatcaaaagagaaggactttga 51  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||| |||||    
T  33560214 aacatgaaggccgggtgaaggagtttgaatcaaaagagaaggattttga 33560262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 88 - 338
Target Start/End: Complemental strand, 39389865 - 39389615
Alignment:
Q  88 ccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcat 187  Q
    ||||||| ||||||| |||||||||||| |||||| | |||||||||||||||||||| ||| ||||| |||||||||||||| || ||||  |||||||    
T  39389865 ccaaatggaggagcaggtattgaaacagaagcattataaaagccaaatgaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcat 39389766  T
Q  188 gagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggc 287  Q
    || ||||||||||| ||||||||||| |    ||||||| |||||||| || || ||| | |  |||||||| |||  ||| ||||||||||||||||||    
T  39389765 gaatcaaaggagaaggaatttgaaggtcaagcgaaggagctggaatctaaaaagaagcatttcgaaagcatgatggtggagctcaaatcaaaattgaggc 39389666  T
Q  288 cattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 338  Q
     |||||||| |||| |||| ||| ||||||| |||||||||||||||||||    
T  39389665 tattgaaagtacaatttcaggaatttgactccaaagagaagcaacttgatg 39389615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 333
Target Start/End: Original strand, 39136598 - 39136821
Alignment:
Q  110 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 209  Q
    |||||| ||||||  |||||||| || ||||||||| |||  ||||||| |||||||||||||||||||| ||||||||| |   | || ||||||||||    
T  39136598 aaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaattggaagaaaaagaatttg 39136697  T
Q  210 aaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaaga 309  Q
    ||||||| ||||| ||| |||||||| |||||  || | | ||||||  |||||| ||| ||||  ||||||||| |||||||||||||||| || | ||    
T  39136698 aaggccggatgaatgagctggaatctaaagagaggcatttcaaaagcgaggtggaggagatcaatgcaaaattgatgccattgaaaggacaaattaagga 39136797  T
Q  310 acttgactctaaagagaagcaact 333  Q
    ||||| ||||||||||||||||||    
T  39136798 acttgcctctaaagagaagcaact 39136821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 110 - 340
Target Start/End: Complemental strand, 39390683 - 39390453
Alignment:
Q  110 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 209  Q
    |||||| |||||| ||||||||||||||||||| || ||| |||||||||||||| |||| ||||| ||| ||||||||| ||||| |||| ||||||||    
T  39390683 aaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttg 39390584  T
Q  210 aaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaaga 309  Q
    ||||||  ||||||||  |||||||| ||  | ||| | || |||||   ||||| ||| ||||| || ||  ||||| ||||||||||||| || | ||    
T  39390583 aaggccaaatgaaggaactggaatctaaaaggaagcattttgaaagccaagtggaggagctcaaaacagaagagaggcaattgaaaggacaagttaagga 39390484  T
Q  310 acttgactctaaagagaagcaacttgatgtc 340  Q
    |||||| ||||||||||||||| ||||||||    
T  39390483 acttgagtctaaagagaagcaatttgatgtc 39390453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 99 - 337
Target Start/End: Complemental strand, 39391147 - 39390918
Alignment:
Q  99 agcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaagga 198  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||| ||||| ||||||||| | ||||||    
T  39391147 agcaggtattgaagcagaagcattgtgaaagccaaatgaaggagcttgagtccaaagagaaacaacttgaaggccaattgaaggagcatgaattaaagga 39391048  T
Q  199 gaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaagga 298  Q
    ||| |||||||||||||||          |||||||| || || ||| | |  || ||||| |||| ||| ||||||||| | ||||| | ||||||| |    
T  39391047 gaaggaatttgaaggccgt---------gtggaatctaaaaagaagcatttcgaaggcatgatggaggagctcaaatcaagaatgaggtctttgaaagaa 39390957  T
Q  299 caacttcaagaacttgactctaaagagaagcaacttgat 337  Q
    ||| || | ||||||||||||||||||||||||||||||    
T  39390956 caagttgaggaacttgactctaaagagaagcaacttgat 39390918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 38792909 - 38793034
Alignment:
Q  88 ccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcat 187  Q
    ||||||||||||||  |||||||||||| ||||||  ||||||||||||||||| ||| |||| |||||||| |||  ||||| |||  ||| |||||||    
T  38792909 ccaaatgaaggagctggtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatgaaggagcat 38793008  T
Q  188 gagtcaaaggagaaagaatttgaagg 213  Q
    || |||||| ||  ||||||||||||    
T  38793009 gactcaaagaagcgagaatttgaagg 38793034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 39221633 - 39221779
Alignment:
Q  88 ccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcat 187  Q
    |||||||||||||| ||  || |||||  | |||| ||||||||| ||||||||| || ||| |||||||||||||| ||||||| |  ||| |||||||    
T  39221633 ccaaatgaaggagcttgagttaaaacaaaaacattttgaaagccagatgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcat 39221732  T
Q  188 gagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatc 234  Q
    |  ||||| |||| ||||||||||||||  ||||||||  |||||||    
T  39221733 ggatcaaaagagagagaatttgaaggccaaatgaaggatttggaatc 39221779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 338
Target Start/End: Complemental strand, 39416100 - 39415896
Alignment:
Q  134 atgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaat 233  Q
    |||||||||||| |||  || ||||||||||||| ||||| ||||| ||||||||| ||  | || ||||||||||||| |||  |||| ||| ||||||    
T  39416100 atgaaggagcttgagtctaatgagaagcaacttggaggccaattgaaggagcatgaatccgaagaaaaagaatttgaagaccgagtgaatgagctggaat 39416001  T
Q  234 ctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaact 333  Q
    || |||||  |  | | || | |  |||||| ||| ||||  ||||||||| |||||||||||||||  || | |||||||  |||||||||||||||||    
T  39416000 ctaaagagaggtatttcaataactgggtggaggagctcaatacaaaattgatgccattgaaaggacagtttaaggaacttgcttctaaagagaagcaact 39415901  T
Q  334 tgatg 338  Q
     ||||    
T  39415900 cgatg 39415896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 338
Target Start/End: Original strand, 39222300 - 39222513
Alignment:
Q  125 gaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaagg 224  Q
    |||||||||||||||||| || |||  |||||||||||||||||||||| | ||| ||||||| | ||||| |||| || ||| |||||||   ||||||    
T  39222300 gaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggccaactgaagg 39222399  T
Q  225 agatggaatctgaagaggagc-ttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaag 323  Q
    |  |||||||  || || ||| || | |||| ||  ||||| ||| |||||||||||  ||||| ||||||||||||  || | ||| |||| |||||||    
T  39222400 aactggaatccaaaaagaagcattttgaaaatca-agtggaggagttcaaatcaaaagagaggcaattgaaaggacaggttaaggaaattgagtctaaag 39222498  T
Q  324 agaagcaacttgatg 338  Q
    ||||| || ||||||    
T  39222499 agaagaaatttgatg 39222513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 337
Target Start/End: Complemental strand, 39390432 - 39390246
Alignment:
Q  151 aaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgtt 250  Q
    |||||||||||||| |||| ||||| ||| ||||||||  ||||| |||| ||||||||||||||  ||||||||  |||||||| ||  | ||| | ||    
T  39390432 aaaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcatttt 39390333  T
Q  251 aaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgat 337  Q
     |||||   ||||| ||| ||||| ||||| ||| || |||||||||| || || | |||||||| |||| ||||| |||| |||||    
T  39390332 gaaagccaagtggaggagctcaaaacaaaagtgaagcaattgaaaggagaagttaaggaacttgagtctagagagatgcaatttgat 39390246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 338
Target Start/End: Original strand, 39221180 - 39221358
Alignment:
Q  151 aaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgtt 250  Q
    |||| ||||| || ||||||| ||||||| ||||||||| ||||||||||| ||| |||||||||||          |||||||| || || ||| | |     
T  39221180 aaaacagaaggaatttgaaggtcgattgaaggagcatgaatcaaaggagaaggaacttgaaggccgt---------gtggaatctaaaaagaagcatttc 39221270  T
Q  251 aaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 338  Q
     |||||||| |||| ||| |||||||||   ||||  |||||||||||||  || | ||||||||||| |||||||||||||||||||    
T  39221271 gaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaagcaacttgatg 39221358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 39458699 - 39458754
Alignment:
Q  283 gaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 338  Q
    ||||| ||||||||||||| || | |||||||| ||||||||||||||||||||||    
T  39458699 gaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatg 39458754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 39415227 - 39415161
Alignment:
Q  119 cattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagc 185  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||||| |||||| ||| ||| |||||    
T  39415227 cattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 39137291 - 39137363
Alignment:
Q  140 gagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaag 212  Q
    |||||||| | ||||||||| |||| |||||||||  ||||||||||||| ||||| | || |||||||||||    
T  39137291 gagcttcattcaaaagagaaacaacatgaaggccgggtgatggagcatgaatcaaaagtgagagaatttgaag 39137363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 39193125 - 39193077
Alignment:
Q  14 cgggtgaaggagttggaatcaaaagagaaggactttgagtgccaaatga 62  Q
    ||||||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  39193125 cgggtgaagaagtttgaatcaaaagagaaggaatttgaatgccaaatga 39193077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 39198805 - 39198757
Alignment:
Q  14 cgggtgaaggagttggaatcaaaagagaaggactttgagtgccaaatga 62  Q
    ||||||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  39198805 cgggtgaagaagtttgaatcaaaagagaaggaatttgaatgccaaatga 39198757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 39390222 - 39390138
Alignment:
Q  151 aaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatct 235  Q
    |||||||||||||| |||| ||||| ||| ||||||||| || || |||| ||| ||||||||||  ||||||||  ||||||||    
T  39390222 aaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatct 39390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 39192806 - 39192751
Alignment:
Q  282 tgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgat 337  Q
    |||||||||||| ||||||| || | ||| || |||||||||||||||||||||||    
T  39192806 tgaggccattgataggacaagttaaggaattttactctaaagagaagcaacttgat 39192751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 39198486 - 39198431
Alignment:
Q  282 tgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgat 337  Q
    |||||||||||| ||||||| || | ||| || |||||||||||||||||||||||    
T  39198486 tgaggccattgataggacaagttaaggaattttactctaaagagaagcaacttgat 39198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 39390740 - 39390697
Alignment:
Q  20 aaggagttggaatcaaaagagaaggactttgagtgccaaatgat 63  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||    
T  39390740 aaggagtttgaatcaaaagagaaggaatttgaatgccaaatgat 39390697  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 38792672 - 38792782
Alignment:
Q  103 tgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaa 202  Q
    ||||||||||||| ||| ||  |||| || ||||||||| ||| |||  ||||| ||||||  |||||||||  ||| |||||| || ||||| |||| |    
T  38792672 tgtattgaaacagaagcttttcgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagaga 38792771  T
Q  203 gaatttgaagg 213  Q
    |||||||||||    
T  38792772 gaatttgaagg 38792782  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 39136877 - 39136951
Alignment:
Q  137 aaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaa 211  Q
    ||||||||| ||| |||||||||||| | |||||||||  ||| ||||||||  ||||| |||| ||||||||||    
T  39136877 aaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaa 39136951  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 39451413 - 39451539
Alignment:
Q  89 caaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatg 188  Q
    ||||||||||||   | ||| |||||| | |||| ||||||||  ||| |||| ||| | | ||| ||||||||||||||| |||| |||| ||||||||    
T  39451413 caaatgaaggagttggaattaaaacagaaacattatgaaagccggatggaggaccttgactcaaatgagaagcaacttgaaagccggttgaaggagcatg 39451512  T
Q  189 agtcaaaggagaaagaatttgaaggcc 215  Q
    | ||||| || | ||| ||||||||||    
T  39451513 aatcaaaagaaagagagtttgaaggcc 39451539  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 39415368 - 39415283
Alignment:
Q  104 gtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatga 189  Q
    |||||||||||| ||||||  ||||||||| |||| |||||| |||  ||||  ||||||  ||||| |||||||| |||||||||    
T  39415368 gtattgaaacagaagcatttagaaagccaagtgaaagagcttgagtcgaaagcaaagcaagatgaagtccgattgaaggagcatga 39415283  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 39474032 - 39473931
Alignment:
Q  110 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 209  Q
    |||||| |||||| ||||||||  ||| || ||||| ||| |||||||||||| ||||| |||||| ||  ||||||| | |||||  ||| ||||||||    
T  39474032 aaacagaagcattttgaaagccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcataaatcaaaacagagagaatttg 39473933  T
Q  210 aa 211  Q
    ||    
T  39473932 aa 39473931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 38792443 - 38792523
Alignment:
Q  133 aatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaagg 213  Q
    ||||||||| ||| |||||||||||||||| | |||||| ||  ||| ||||||||| |||||   || ||||||||||||    
T  38792443 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 38792523  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 39137445 - 39137489
Alignment:
Q  294 aaggacaacttcaagaacttgactctaaagagaagcaacttgatg 338  Q
    |||||||| || |||||||||| |||||||||||| |||||||||    
T  39137445 aaggacaatttaaagaacttgagtctaaagagaagaaacttgatg 39137489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 39422244 - 39422180
Alignment:
Q  110 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccg 174  Q
    |||||| |||| | |||||||| ||||||||| ||| |||  ||||||||||||||||| |||||    
T  39422244 aaacagaagcaatttgaaagccgaatgaaggaccttgagtctaaagagaagcaacttgatggccg 39422180  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 39451686 - 39451790
Alignment:
Q  110 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 209  Q
    |||||| | |||| ||||||||  ||| |||| ||| | ||||| |||| ||||| ||| |||||  ||||||||||||| ||||| | || ||||||||    
T  39451686 aaacagaaacattatgaaagccggatggaggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttg 39451785  T
Q  210 aaggc 214  Q
    |||||    
T  39451786 aaggc 39451790  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 333
Target Start/End: Original strand, 19806959 - 19807182
Alignment:
Q  110 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 209  Q
    |||||| ||||||  |||||||| || ||||||||| |||  ||||||| |||||||||||||||||||| ||||||||| ||| | ||  |||||||||    
T  19806959 aaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaatcagaagaacaagaatttg 19807058  T
Q  210 aaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaaga 309  Q
    |||||||  |||| ||| |||||||| |||||  || | | ||||||  |||||| ||| ||||  ||||||||| ||||||||||||||||||| | ||    
T  19807059 aaggccgagtgaatgagctggaatctaaagagaggcatttcaaaagcgaggtggaggagctcaatacaaaattgatgccattgaaaggacaacttaagga 19807158  T
Q  310 acttgactctaaagagaagcaact 333  Q
     |||| ||||||||||||||||||    
T  19807159 gcttgcctctaaagagaagcaact 19807182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 19807225 - 19807312
Alignment:
Q  124 tgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaa 211  Q
    ||||| || ||| ||||||||| ||| |||||||||||| | |||||||||  ||| ||||||||  ||||| |||| ||||||||||    
T  19807225 tgaaaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaa 19807312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 19807395 - 19807439
Alignment:
Q  294 aaggacaacttcaagaacttgactctaaagagaagcaacttgatg 338  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||    
T  19807395 aaggacaagttaaagaacttgagtctaaagcgaagcaacttgatg 19807439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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