View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8829_low_5 (Length: 281)
Name: NF8829_low_5
Description: NF8829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8829_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 84 - 261
Target Start/End: Complemental strand, 46981453 - 46981276
Alignment:
| Q |
84 |
atatcttcgatcataagtttcggtgctatagagctaaacccattctaaaattaaagaccaataaaaaatagaggattaagaacaaaaacctggcaagaca |
183 |
Q |
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| T |
46981453 |
atatcttcgatcataagtttcggtgctatagagctaaacccattctaaaattaaagaccaataaaaaatagaggattaagaacaaaaacctggcaagaca |
46981354 |
T |
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| Q |
184 |
actccctggttggagacaagatgagtgcagtgggaaaagcaacatcggaatcaccaccacctccacgtggcaacaaac |
261 |
Q |
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| T |
46981353 |
actccctagttggagacaagatgagtgcagtgggaaaagcaacatcggaatcaacaccacctccacgtggcaacaaac |
46981276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 46981534 - 46981488
Alignment:
| Q |
40 |
agacaccaacaccaacactggtagtaatataagaaaatgacataata |
86 |
Q |
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| T |
46981534 |
agacaccaacaccaacactggtagtaatataagaaaatgacataata |
46981488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 12278827 - 12278867
Alignment:
| Q |
45 |
ccaacaccaacactggtagtaatataagaaaatgacataat |
85 |
Q |
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| T |
12278827 |
ccaacaccaacactgataataatttaagaaaatgacataat |
12278867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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