View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_1 (Length: 889)
Name: NF8830_high_1
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 19 - 698
Target Start/End: Original strand, 55382878 - 55383557
Alignment:
| Q |
19 |
agacccctggtttgatcgataacaccagggacgccttttggaggtggatgatgaggggttccaagagttaataacagtgatatattggacgccccaaact |
118 |
Q |
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| T |
55382878 |
agacccctggtttgatcgataacaccagggacgccttttggaggtggatgatgaggggttccaagagttaataacagtgatatattggacaccccaaatt |
55382977 |
T |
|
| Q |
119 |
gctgcatatacagacgcgcaagccatcctccggccgagtgaccaatcaatgatagagtggtctcaggaggtgctaaatccatggcctcttgaacagcatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55382978 |
gctgcatatacagacgcgcaagccatcctccggccgagtgaccaatcaatgatagagtggtctcaggaggtgctaaatccatggcctcttgaacagcatc |
55383077 |
T |
|
| Q |
219 |
atcaactctcttcaaataccaatcgaggatgggcgttggttgaagagtgccacgccagtaattgggatcgatcaaaccagcggcattccggagccaatca |
318 |
Q |
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| T |
55383078 |
atcaactctcttcaaataccaatcgaggatgggcgttggttgaagagtgccacgccagtaattgggatcgatcaaaccagcggcattccggagccaatca |
55383177 |
T |
|
| Q |
319 |
ggtcttgacaccttggcaacaacggtggacacaccgtagttattgttcagagttgcctccaacttctggtagtcaccggaattgttccctaacccctggt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55383178 |
ggtcttgacaccttggcaacaacggtggacacaccgtagttattgttcagagttgcctccaacttctggtagtcaccggaattgttccctaacccctggt |
55383277 |
T |
|
| Q |
419 |
tcaagaaataaaaaaccaaatgaatgcgatgtgaggagcggtgataatatagatatagagaaagagaaagagagactaaccgggagaatgacggcgggtc |
518 |
Q |
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| T |
55383278 |
tcaagaaataaaaaaccaaatgaatgcgatgtgaggagcggtgataatatagatatagagaaagagaaagagagactaaccgggagaatgacggcgggtc |
55383377 |
T |
|
| Q |
519 |
gatagttattggtgnnnnnnnnnnnnnnnnnnnnnngcagtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattac |
618 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55383378 |
gatagttattggtggaagaagatgaagaagaagaaggccgtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattac |
55383477 |
T |
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| Q |
619 |
tgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa |
698 |
Q |
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| T |
55383478 |
tgctcgctcactctgcttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa |
55383557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 696 - 770
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
| Q |
696 |
taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata |
770 |
Q |
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| T |
19341907 |
taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata |
19341979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 703 - 881
Target Start/End: Original strand, 53730768 - 53730945
Alignment:
| Q |
703 |
ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa |
802 |
Q |
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|||||||||||| |||||| ||||||| ||||||||||| ||| |||||||| |||| | |||||||| |||| ||||||||||||||| |
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| T |
53730768 |
ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa |
53730865 |
T |
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| Q |
803 |
taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgctt |
881 |
Q |
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| T |
53730866 |
taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc-ccccattcttctctctgctt |
53730945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 699 - 778
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
| Q |
699 |
gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt |
778 |
Q |
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|||||||||||||||| |||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
53731353 |
gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt |
53731276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 788 - 883
Target Start/End: Original strand, 596765 - 596862
Alignment:
| Q |
788 |
tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgcttct |
883 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||| |
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| T |
596765 |
tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactccccccattattctctatgcttct |
596862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 698 - 778
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
| Q |
698 |
agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt |
778 |
Q |
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||||||||||||||||| |||||| ||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||| |
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| T |
597268 |
agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt |
597190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 698 - 778
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
| Q |
698 |
agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt |
778 |
Q |
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||||||||||||||||| |||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||| |
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| T |
26936796 |
agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt |
26936874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 731 - 877
Target Start/End: Complemental strand, 26937344 - 26937205
Alignment:
| Q |
731 |
aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc |
830 |
Q |
| |
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||||| |||||| |||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
26937344 |
aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc |
26937254 |
T |
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| Q |
831 |
tccacgttcttgtc--agttgtgtcgttactctccccattcttctctct |
877 |
Q |
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|||||||||||||| ||||||||||||||| ||||||| || ||||| |
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| T |
26937253 |
tccacgttcttgtctttgttgtgtcgttactccccccatttttttctct |
26937205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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