View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_10 (Length: 398)
Name: NF8830_high_10
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 1318251 - 1318623
Alignment:
| Q |
18 |
acacttgcacaagtagctatgataccactaaaaggacnnnnnnntgttgacataacttcaacattatgcacattgaatgttgtcatcaaaatcaaatgcc |
117 |
Q |
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| T |
1318251 |
acacttgcacaagtagctatgatgccactaaaaggacaaaaaaatgttgacataacttcaacattatgcacattgaatgttgtcatcaaaatcaaatgcc |
1318350 |
T |
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| Q |
118 |
acttttgcatctgtgtaatataataaccatagttgttcatcactcattacaaaatacaacaccaaaattttcttctttgctagctcaaatctttctacca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1318351 |
acttttgcatctgtgtaatataataaccatagttgttcatcactcattacaaaatccaacaccaaaattttcttctttgctagctcaaatctttcaacca |
1318450 |
T |
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| Q |
218 |
atctcttcagaaaccaaaatcttccaatttattaatcttttcaatttggcttgcttcttgattatcacaatgaccataaatcatttcattagtggtgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
1318451 |
atctcttcagaaaccaaaatcttccaatttattaatcttttcaatttggcttgcttcttgattatcacaatgacaataaatcatttcattagtggtgact |
1318550 |
T |
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| Q |
318 |
ggtccctgattttggtgcagcctcgtgtgagagtgtatgtttttctcta--tctctaccttaattagtataat |
388 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1318551 |
ggtcactgattttggtgcagcctcgtgtgagagtgtatgtttttctctatctctctaccttaattagtctaat |
1318623 |
T |
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