View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8830_high_14 (Length: 345)

Name: NF8830_high_14
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8830_high_14
NF8830_high_14
[»] chr1 (3 HSPs)
chr1 (17-326)||(27656661-27656970)
chr1 (31-114)||(28351315-28351398)
chr1 (123-194)||(23713980-23714052)
[»] chr3 (8 HSPs)
chr3 (30-126)||(20532502-20532598)
chr3 (123-192)||(16983938-16984007)
chr3 (122-191)||(20532624-20532692)
chr3 (30-91)||(47844140-47844201)
chr3 (75-126)||(21014360-21014411)
chr3 (31-119)||(7031485-7031573)
chr3 (66-118)||(15312167-15312219)
chr3 (82-118)||(26771505-26771541)
[»] chr5 (6 HSPs)
chr5 (30-126)||(18148205-18148301)
chr5 (70-118)||(19255630-19255678)
chr5 (82-118)||(26019496-26019532)
chr5 (82-126)||(27167611-27167655)
chr5 (30-89)||(39073407-39073466)
chr5 (82-110)||(42927724-42927752)
[»] chr2 (8 HSPs)
chr2 (70-126)||(44472935-44472991)
chr2 (34-113)||(7708836-7708915)
chr2 (56-101)||(26317580-26317625)
chr2 (60-121)||(37444722-37444783)
chr2 (82-115)||(17765481-17765514)
chr2 (82-126)||(20240003-20240047)
chr2 (127-191)||(20240077-20240141)
chr2 (57-129)||(42245905-42245977)
[»] chr7 (5 HSPs)
chr7 (208-271)||(41309780-41309843)
chr7 (59-119)||(9895276-9895336)
chr7 (208-275)||(41324478-41324545)
chr7 (59-113)||(38652447-38652501)
chr7 (70-110)||(11277760-11277800)
[»] chr6 (6 HSPs)
chr6 (146-193)||(3731346-3731393)
chr6 (125-194)||(33184916-33184984)
chr6 (30-126)||(33185013-33185109)
chr6 (135-192)||(10919711-10919768)
chr6 (82-119)||(15959333-15959370)
chr6 (80-114)||(10587381-10587415)
[»] chr8 (6 HSPs)
chr8 (61-126)||(45439370-45439434)
chr8 (60-94)||(9594695-9594729)
chr8 (70-110)||(13395981-13396021)
chr8 (131-191)||(18257649-18257709)
chr8 (70-110)||(41665876-41665916)
chr8 (28-88)||(43845535-43845595)
[»] chr4 (1 HSPs)
chr4 (60-113)||(2187028-2187081)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 27656970 - 27656661
Alignment:
Q  17 agaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||||     
T  27656970 agaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcagtactcatttgtggtggtcgagcccacttttatttttgaggatcgg 27656871  T
Q  117 ctagctttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggcctaatnnnnnnnngtttacctt 216  Q
    ||||||||||||| |||| |||| |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||| ||        |||||||||    
T  27656870 ctagctttttcgtgattgttttggcacgtcttgtgctgagacgattgtgctgtcagtgttaatataattcattttggcctgataaaaaaaagtttacctt 27656771  T
Q  217 gcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaattctctgcattgttacttataggtc 316  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27656770 gcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaattctctgcattgttacttataggtc 27656671  T
Q  317 ataatcaatg 326  Q
    ||||||||||    
T  27656670 ataatcaatg 27656661  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 28351398 - 28351315
Alignment:
Q  31 ttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatc 114  Q
    ||||||||| |||||||||| ||   ||  ||| ||||| |||||| |||||||||||||||||||||| | ||||| ||||||    
T  28351398 ttgtggtggttgaaagctagtaacgctacctttattttcagtactcgtttgtggtggtcgagcccacttatgtgttttggcatc 28351315  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 23713980 - 23714052
Alignment:
Q  123 ttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgtt-gtcagtgttaatataattcattttggc 194  Q
    |||||||||||  |||| ||||| ||||||| | |||||||| || || ||||||||||||||| ||||||||    
T  23713980 ttttcgtaattattttggcacgctttgtgcttatgcgattgcatttgttagtgttaatataatttattttggc 23714052  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 20532502 - 20532598
Alignment:
Q  30 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||||||||||||| || |||| |   ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||| |||||    
T  20532502 tttgtggtggctgaaagccagtaagactgcctttgttttcggcactcatttgtggtggtcgagcccacttatgtgtttgggcatcggctagattttt 20532598  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 16984007 - 16983938
Alignment:
Q  123 ttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 192  Q
    ||||||| |||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  16984007 ttttcgtgattgttttggcacgccttgtgctgaagcgattgcactgtcagtgttaatataattcattttg 16983938  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 20532624 - 20532692
Alignment:
Q  122 tttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcatttt 191  Q
    |||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  20532624 tttttcgtgatttctttcgcacgccttgtactg-ggcgattgcgttgtcagtgttaatataattcatttt 20532692  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 47844140 - 47844201
Alignment:
Q  30 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcga 91  Q
    |||||||||||| |||||||| |||   |||||| ||||||||| |||||||||||||||||    
T  47844140 tttgtggtggctaaaagctagaaaggccaattttattttcggtattcatttgtggtggtcga 47844201  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 21014411 - 21014360
Alignment:
Q  75 tcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||||||||| |||||||||| | ||||||||||||| ||| ||||||    
T  21014411 tcatttgtggtggttgagcccacttatgtgtttgggcatcgtctaacttttt 21014360  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 7031485 - 7031573
Alignment:
Q  31 ttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgacta 119  Q
    ||||||||| |||||||||| || ||   |||| |||| ||||| |||   |||||||||||||| ||| ||||||||||||| |||||    
T  7031485 ttgtggtggttgaaagctagtaacatagtttttatttttggtacacatagttggtggtcgagcccgcttctatgtttgggcattgacta 7031573  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 15312219 - 15312167
Alignment:
Q  66 tttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgact 118  Q
    ||||||||||||| | |||||||||| |||||| |||||| |||| |||||||    
T  15312219 tttcggtactcatctttggtggtcgaacccactcttatgtatgggtatcgact 15312167  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 26771505 - 26771541
Alignment:
Q  82 tggtggtcgagcccacttttatgtttgggcatcgact 118  Q
    |||||||||||||||||||||||| || |||||||||    
T  26771505 tggtggtcgagcccacttttatgtatgagcatcgact 26771541  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 18148205 - 18148301
Alignment:
Q  30 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||||| |||||||||| ||   ||  ||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||||||||    
T  18148205 tttgtggtggttgaaagctagtaacgctacctttgttttcggtactcatttgtggtggtcaagctcacttatgtgtttgggtatcggctagcttttt 18148301  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 19255630 - 19255678
Alignment:
Q  70 ggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgact 118  Q
    ||||||||| | |||||||||||||| |||| |||||||||||| ||||    
T  19255630 ggtactcatatttggtggtcgagcccgctttcatgtttgggcattgact 19255678  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 26019496 - 26019532
Alignment:
Q  82 tggtggtcgagcccacttttatgtttgggcatcgact 118  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  26019496 tggtggtcgagtccacttttatgtatgggcatcgact 26019532  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 27167611 - 27167655
Alignment:
Q  82 tggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||| ||||| || |||||| ||||||||||||||||||||    
T  27167611 tggtggtctagccctctcttatgtatgggcatcgactagcttttt 27167655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 39073466 - 39073407
Alignment:
Q  30 tttgtggtggctgaaagctag-caagattaattttgttttcggtactcatttgtggtggtc 89  Q
    ||||||||||||||||||||| |||| ||| ||||||||| |||||| | |||||||||||    
T  39073466 tttgtggtggctgaaagctagacaag-ttacttttgtttttggtacttagttgtggtggtc 39073407  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 42927752 - 42927724
Alignment:
Q  82 tggtggtcgagcccacttttatgtttggg 110  Q
    |||||||||||||||||||||||||||||    
T  42927752 tggtggtcgagcccacttttatgtttggg 42927724  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 44472991 - 44472935
Alignment:
Q  70 ggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||    
T  44472991 ggtactcattcgtggtggtcgagccctcttttgtgtttgggcatcgactagtttttt 44472935  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 7708915 - 7708836
Alignment:
Q  34 tggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 113  Q
    |||||||| |||||||  ||  ||||||||||||| |||| |||| |||||||||||||||| || || |||||||||||    
T  7708915 tggtggcttaaagctaagaaagttaattttgtttttggtattcatatgtggtggtcgagcccgctcttgtgtttgggcat 7708836  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 26317580 - 26317625
Alignment:
Q  56 ttaattttgttttcggtactcatttgtggtggtcgagcccactttt 101  Q
    ||||||||||||| | || |||||||||||||||||||||||||||    
T  26317580 ttaattttgtttttgctattcatttgtggtggtcgagcccactttt 26317625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 37444783 - 37444722
Alignment:
Q  60 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagc 121  Q
    |||| |||| || ||||||||||| ||||||||||| || || |||||||||||||||||||    
T  37444783 ttttatttttggcactcatttgtgatggtcgagccccctgttgtgtttgggcatcgactagc 37444722  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 17765481 - 17765514
Alignment:
Q  82 tggtggtcgagcccacttttatgtttgggcatcg 115  Q
    |||||||||||||||||||||||| |||||||||    
T  17765481 tggtggtcgagcccacttttatgtatgggcatcg 17765514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 20240003 - 20240047
Alignment:
Q  82 tggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||||||||| ||||| ||| || |||||||||||||||||    
T  20240003 tggtggtcgagccctcttttgtgtatgagcatcgactagcttttt 20240047  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 20240077 - 20240141
Alignment:
Q  127 cgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcatttt 191  Q
    |||||||| ||||  ||||||| |||| | || ||| || |||||||||||||||||||||||||    
T  20240077 cgtaattgttttggtacgccttatgctaaagcaattacgctgtcagtgttaatataattcatttt 20240141  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 42245977 - 42245905
Alignment:
Q  57 taattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagctttttcgt 129  Q
    |||||||||||| ||||||||| ||| ||||||||| || ||| |||||||| | |||| ||| ||| |||||    
T  42245977 taattttgtttttggtactcatatgttgtggtcgagtccccttatatgtttgtgtatcggctaacttgttcgt 42245905  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 41309780 - 41309843
Alignment:
Q  208 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcac 271  Q
    |||||||||||||||||| |||||| |||| |||||| |||||||| | |||||||||||||||    
T  41309780 gtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttcac 41309843  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 9895336 - 9895276
Alignment:
Q  59 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgacta 119  Q
    |||||||||| |||| || | |||||||| ||||||| |||||||||||||||||||||||    
T  9895336 attttgtttttggtattcgtatgtggtggacgagcccgcttttatgtttgggcatcgacta 9895276  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 41324478 - 41324545
Alignment:
Q  208 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagca 275  Q
    ||||||||||||| |||| |||||| |||| ||| || ||||||||||  |||||||| |||||||||    
T  41324478 gtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatctttttcacagca 41324545  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 38652447 - 38652501
Alignment:
Q  59 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 113  Q
    ||||| |||| || |||||| |||||||||||||||| ||| |||||||||||||    
T  38652447 attttatttttgggactcatatgtggtggtcgagcccgcttgtatgtttgggcat 38652501  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 11277760 - 11277800
Alignment:
Q  70 ggtactcatttgtggtggtcgagcccacttttatgtttggg 110  Q
    |||||||||  ||||||||||||||||||||||||| ||||    
T  11277760 ggtactcatcagtggtggtcgagcccacttttatgtctggg 11277800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 3731393 - 3731346
Alignment:
Q  146 cttgtgctgaggcgattgcgttgtcagtgttaatataattcattttgg 193  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||    
T  3731393 cttgtgctgaagcaattgcgttgtcagtgttaatataattcattttgg 3731346  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 33184984 - 33184916
Alignment:
Q  125 ttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggc 194  Q
    ||||| |||| |||| ||||||||||||||| || |||||| ||||||||||||| ||||||||||||||    
T  33184984 ttcgtgattgttttggcacgccttgtgctgaagcaattgcgatgtcagtgttaat-taattcattttggc 33184916  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 33185109 - 33185013
Alignment:
Q  30 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||||| |||||||||| ||   ||  |||| |||| |||||||||| |||||||||||||||||| | ||| || ||||| |||||||||||    
T  33185109 tttgtggtggttgaaagctagtaatgctacatttgctttcagtactcatttttggtggtcgagcccacttatgtgtgtgtgcatcaactagcttttt 33185013  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 10919768 - 10919711
Alignment:
Q  135 ctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 192  Q
    ||||| |||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  10919768 ctttggcacgtcttgtgctgaagtaattacgttgtcagtgttaatataattcattttg 10919711  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 15959333 - 15959370
Alignment:
Q  82 tggtggtcgagcccacttttatgtttgggcatcgacta 119  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15959333 tggtggtcgagcccacttttatgtatgggcatcgacta 15959370  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 10587381 - 10587415
Alignment:
Q  80 tgtggtggtcgagcccacttttatgtttgggcatc 114  Q
    |||||||||||||||||||| ||||||||||||||    
T  10587381 tgtggtggtcgagcccacttgtatgtttgggcatc 10587415  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 45439370 - 45439434
Alignment:
Q  61 tttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 126  Q
    |||||||| |||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||    
T  45439370 tttgtttttggtactcatt-gtggcggtcgagcccacttgtgtgtttgggcatcggctagcttttt 45439434  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 9594695 - 9594729
Alignment:
Q  60 ttttgttttcggtactcatttgtggtggtcgagcc 94  Q
    |||||||||||| ||||||||||||||||||||||    
T  9594695 ttttgttttcggcactcatttgtggtggtcgagcc 9594729  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 13396021 - 13395981
Alignment:
Q  70 ggtactcatttgtggtggtcgagcccacttttatgtttggg 110  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  13396021 ggtactcatcagtggtggtcgagcccgcttttatgtttggg 13395981  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 18257649 - 18257709
Alignment:
Q  131 attgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcatttt 191  Q
    |||| |||| ||||||||||||||| || ||| ||| ||||||||||||| |||| |||||    
T  18257649 attgttttggcacgccttgtgctgaagcaattacgtagtcagtgttaatacaatttatttt 18257709  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 41665876 - 41665916
Alignment:
Q  70 ggtactcatttgtggtggtcgagcccacttttatgtttggg 110  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  41665876 ggtactcatcagtggtggtcgagcccgcttttatgtttggg 41665916  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 43845535 - 43845595
Alignment:
Q  28 tttttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggt 88  Q
    |||||||||||||||||||||||  |  ||  ||||||||| ||||||||| |||||||||    
T  43845535 tttttgtggtggctgaaagctaggcatgtttcttttgtttttggtactcatgtgtggtggt 43845595  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 2187081 - 2187028
Alignment:
Q  60 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 113  Q
    ||||||||| || |||||| |||||||||||||||| ||| | |||||||||||    
T  2187081 ttttgtttttgggactcatatgtggtggtcgagcccgcttgtttgtttgggcat 2187028  T

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