View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8830_high_17 (Length: 317)
Name: NF8830_high_17
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 12268848 - 12269124
Alignment:
| Q |
20 |
ttatggtagttagtcaagtaaaacaatgcgttgtgatgatgttaaagattatgctagtcgtaactcatgctcgtgatttacttcaatcacaagtaattga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12268848 |
ttatggtagttagtcaagtaaaacaatgcgttgtgatgatgttaatgattatgctagtcgtaactcatgctcgtgatttacttcaatcacaagtaattga |
12268947 |
T |
|
| Q |
120 |
gccaaatggnnnnnnnnnnccgcatattacgtgtcgtgctaggtgtttgaatccattgaaatatcacaaatatataccatcatgttttaagtcactagaa |
219 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12268948 |
gccaaatggttttttttttccgcatattacgtgtcgtgctaggtgtttgaatccattgaaatatcacaaatatataccatcatgttttaagtcactagaa |
12269047 |
T |
|
| Q |
220 |
tcagtcacaaacctcgtgaattattatttttgctacgaaaaatgttatgaggaatgtattaattgaataatggtatt |
296 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12269048 |
tcagtcacaaacctcgagaattattatttttgctacgaaaaatgttatgaggattgtattaattgaataatggtatt |
12269124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University