View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8830_high_26 (Length: 281)
Name: NF8830_high_26
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_26 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 47116536 - 47116798
Alignment:
| Q |
19 |
tttagttacaaatttcaaatcacataatatagtctattgagatgnnnnnnnnnnttaatattatttggtggaaaactggtaaggaaagagaaaatgaaag |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116536 |
tttagttacgaatttcaaatcacataatatagtctattgagaagaagaaaaaaaaaaaaattatttggtggaaaactggtaaggaaagagaaaatgaaag |
47116635 |
T |
|
| Q |
119 |
aaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaagaaaatttccacgtcatacatctcattcaatgatgttatgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116636 |
aaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaagaaaagttccacgtcatacatctcattcaatgatgttatgtt |
47116735 |
T |
|
| Q |
219 |
aatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcataccctt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116736 |
aatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcataccctt |
47116798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University