View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_27 (Length: 274)
Name: NF8830_high_27
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 18089897 - 18089659
Alignment:
| Q |
18 |
gatattagatggcacttctttgctcagctgtggatccctagatgaaatttgcgcaaatcttgtatgcctcatcacacagtcaaagaggaacagttgaagt |
117 |
Q |
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| T |
18089897 |
gatattagatggcacttctttgctcagctgtggatccctagatgaaatttgcgcaaatcttgtatgcctcatcacacagtcaaagaggaacagtggaagt |
18089798 |
T |
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| Q |
118 |
ttgcatcacataacaagaaatattaaatggaagatgttaactagtgcttc----------tgagcactctttaaaacctttaagaggtaac-nnnnnnng |
206 |
Q |
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| T |
18089797 |
ttgcatcacataacaagaaatattaaatggaagatgttaacgagtgcctccgagcactctcgagcactctttaaaacatttaagaggtaacttttttttg |
18089698 |
T |
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| Q |
207 |
aaaagttatgtaataaatgcataggaaattgaaatattt |
245 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| |
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| T |
18089697 |
aaaaattatgtaataaatgcattggaaattgaaatattt |
18089659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 52757678 - 52757440
Alignment:
| Q |
18 |
gatattagatggcacttctttgctcagctgtggatccctagatgaaatttgcgcaaatcttgtatgcctcatcacacagtcaaagaggaacagttgaagt |
117 |
Q |
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| T |
52757678 |
gatattagatggcacttctttgctcagctgtggatccctagatgaaatttgcgcaaatcttgtatgcctcatcacacagtcaaagaggaacagtggaagt |
52757579 |
T |
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| Q |
118 |
ttgcatcacataacaagaaatattaaatggaagatgttaactagtgcttc----------tgagcactctttaaaacctttaagaggtaac-nnnnnnng |
206 |
Q |
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| T |
52757578 |
ttgcatcacataacaagaaatattaaatggaagatgttaacgagtgcctccgagcactctcgagcactctttaaaacatttaagaggtaacttttttttg |
52757479 |
T |
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| Q |
207 |
aaaagttatgtaataaatgcataggaaattgaaatattt |
245 |
Q |
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| T |
52757478 |
aaaaattatgtaataaatgcattggaaattgaaatattt |
52757440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 7750545 - 7750472
Alignment:
| Q |
172 |
cactctttaaaacctttaagaggtaacnnnnnnngaaaagttatgtaataaatgcataggaaattgaaatattt |
245 |
Q |
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| T |
7750545 |
cactctttaaaacctttaaaaggtaactttttttgaaaagttatataattaatgcattggaaattgaaacattt |
7750472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 5961989 - 5962030
Alignment:
| Q |
206 |
gaaaagttatgtaataaatgcataggaaattgaaatatttaa |
247 |
Q |
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| T |
5961989 |
gaaaatttatgtaatcaatgcattggaaattgaaatatttaa |
5962030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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