View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8830_high_37 (Length: 228)

Name: NF8830_high_37
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8830_high_37
NF8830_high_37
[»] chr3 (19 HSPs)
chr3 (3-228)||(11883169-11883394)
chr3 (13-228)||(13327476-13327690)
chr3 (11-228)||(51962070-51962287)
chr3 (9-108)||(8604058-8604158)
chr3 (13-133)||(16260485-16260605)
chr3 (13-133)||(18910093-18910213)
chr3 (13-133)||(53770064-53770184)
chr3 (85-210)||(18738900-18739025)
chr3 (85-203)||(8603795-8603915)
chr3 (122-226)||(17937516-17937620)
chr3 (85-193)||(40040101-40040211)
chr3 (85-193)||(15549585-15549695)
chr3 (85-197)||(37917352-37917466)
chr3 (43-108)||(17937800-17937865)
chr3 (43-108)||(11823474-11823539)
chr3 (43-108)||(18739169-18739234)
chr3 (110-201)||(25104976-25105069)
chr3 (85-201)||(17759317-17759434)
chr3 (85-201)||(19060637-19060754)
[»] chr2 (18 HSPs)
chr2 (6-228)||(19658981-19659203)
chr2 (12-133)||(8942947-8943068)
chr2 (12-133)||(12636902-12637023)
chr2 (12-133)||(12642656-12642777)
chr2 (13-133)||(42178996-42179116)
chr2 (13-133)||(21275159-21275279)
chr2 (24-129)||(3799649-3799754)
chr2 (26-108)||(43642152-43642236)
chr2 (26-106)||(22577365-22577447)
chr2 (46-108)||(19434246-19434308)
chr2 (85-201)||(19434452-19434570)
chr2 (17-108)||(29113633-29113725)
chr2 (16-108)||(19667825-19667918)
chr2 (85-193)||(22331901-22332011)
chr2 (110-201)||(43641890-43641983)
chr2 (111-201)||(24840973-24841065)
chr2 (85-159)||(7320557-7320632)
chr2 (85-186)||(29113396-29113499)
[»] chr5 (12 HSPs)
chr5 (16-228)||(20832916-20833128)
chr5 (12-133)||(9731418-9731539)
chr5 (6-107)||(14342394-14342496)
chr5 (7-108)||(22111192-22111294)
chr5 (6-108)||(21108943-21109046)
chr5 (85-201)||(21108683-21108801)
chr5 (85-201)||(14342641-14342759)
chr5 (85-201)||(24226459-24226577)
chr5 (26-108)||(20313887-20313970)
chr5 (43-108)||(24226251-24226316)
chr5 (85-175)||(33150282-33150374)
chr5 (199-228)||(431461-431490)
[»] chr7 (26 HSPs)
chr7 (11-196)||(25123417-25123603)
chr7 (11-133)||(370188-370309)
chr7 (12-133)||(14251932-14252053)
chr7 (12-133)||(15926668-15926789)
chr7 (13-133)||(2191287-2191407)
chr7 (17-108)||(21675597-21675689)
chr7 (13-108)||(2027991-2028086)
chr7 (17-108)||(46473358-46473450)
chr7 (85-187)||(8564500-8564604)
chr7 (85-186)||(15978979-15979082)
chr7 (46-108)||(8564304-8564366)
chr7 (26-117)||(18080413-18080506)
chr7 (85-201)||(46473096-46473214)
chr7 (15-108)||(39292423-39292515)
chr7 (85-201)||(3193061-3193180)
chr7 (46-108)||(15978774-15978836)
chr7 (46-108)||(19382598-19382660)
chr7 (85-193)||(21539112-21539222)
chr7 (89-193)||(21675837-21675943)
chr7 (17-104)||(14275598-14275686)
chr7 (15-108)||(4597453-4597547)
chr7 (46-108)||(21538906-21538968)
chr7 (85-201)||(28719628-28719745)
chr7 (85-201)||(39292658-39292776)
chr7 (85-201)||(44306098-44306216)
chr7 (85-201)||(18080597-18080715)
[»] scaffold0251 (2 HSPs)
scaffold0251 (13-133)||(14498-14618)
scaffold0251 (13-97)||(22544-22628)
[»] scaffold0037 (1 HSPs)
scaffold0037 (13-133)||(93999-94119)
[»] chr6 (14 HSPs)
chr6 (13-133)||(16230992-16231112)
chr6 (24-133)||(18003615-18003724)
chr6 (11-108)||(23976896-23976992)
chr6 (13-133)||(13621745-13621865)
chr6 (25-133)||(15735823-15735931)
chr6 (13-107)||(25650285-25650380)
chr6 (85-201)||(17857408-17857526)
chr6 (85-201)||(23220875-23220993)
chr6 (17-108)||(23221137-23221229)
chr6 (85-201)||(26505921-26506038)
chr6 (142-201)||(4172640-4172700)
chr6 (142-201)||(4228249-4228309)
chr6 (52-107)||(5485357-5485412)
chr6 (52-115)||(10974086-10974149)
[»] chr4 (12 HSPs)
chr4 (13-133)||(7133081-7133201)
chr4 (13-133)||(15273391-15273511)
chr4 (11-133)||(19999824-19999945)
chr4 (85-201)||(54364446-54364564)
chr4 (43-105)||(17866226-17866288)
chr4 (17-108)||(10238186-10238277)
chr4 (85-221)||(10238420-10238557)
chr4 (122-201)||(12134663-12134744)
chr4 (50-104)||(9565805-9565859)
chr4 (15-116)||(12344932-12345034)
chr4 (39-110)||(12335486-12335557)
chr4 (188-228)||(41257452-41257491)
[»] chr1 (6 HSPs)
chr1 (13-133)||(20825862-20825982)
chr1 (17-108)||(76701-76792)
chr1 (85-201)||(76936-77054)
chr1 (85-183)||(9785101-9785199)
chr1 (43-108)||(52400478-52400543)
chr1 (161-193)||(20822170-20822202)
[»] chr8 (18 HSPs)
chr8 (12-133)||(3432316-3432437)
chr8 (13-133)||(16039992-16040112)
chr8 (17-108)||(25757424-25757516)
chr8 (17-108)||(45559857-45559949)
chr8 (85-201)||(17501102-17501219)
chr8 (110-201)||(19332515-19332608)
chr8 (27-108)||(22313102-22313185)
chr8 (17-106)||(25295406-25295496)
chr8 (43-108)||(19332290-19332355)
chr8 (88-201)||(11543687-11543802)
chr8 (52-115)||(24383840-24383903)
chr8 (85-201)||(20176859-20176977)
chr8 (85-201)||(20221586-20221704)
chr8 (85-201)||(22312842-22312959)
chr8 (85-175)||(34012940-34013032)
chr8 (85-201)||(45560092-45560209)
chr8 (85-201)||(25295144-25295261)
chr8 (85-201)||(25757164-25757281)
[»] scaffold0303 (1 HSPs)
scaffold0303 (24-133)||(1120-1229)
[»] scaffold0047 (2 HSPs)
scaffold0047 (6-108)||(76408-76511)
scaffold0047 (106-201)||(76147-76244)
[»] scaffold0183 (2 HSPs)
scaffold0183 (43-108)||(10249-10314)
scaffold0183 (85-193)||(9995-10105)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-133)||(187957-188074)
[»] scaffold0090 (3 HSPs)
scaffold0090 (16-108)||(35625-35718)
scaffold0090 (26-108)||(4023-4107)
scaffold0090 (85-201)||(4251-4369)
[»] scaffold0231 (2 HSPs)
scaffold0231 (26-108)||(13613-13697)
scaffold0231 (85-201)||(13841-13958)
[»] scaffold0601 (1 HSPs)
scaffold0601 (16-108)||(1978-2071)
[»] scaffold1204 (1 HSPs)
scaffold1204 (85-201)||(1117-1235)
[»] scaffold0174 (2 HSPs)
scaffold0174 (46-108)||(20793-20855)
scaffold0174 (85-159)||(21000-21074)
[»] scaffold0017 (2 HSPs)
scaffold0017 (85-201)||(11754-11872)
scaffold0017 (26-108)||(12016-12098)
[»] scaffold0079 (1 HSPs)
scaffold0079 (85-201)||(5000-5118)
[»] scaffold0043 (1 HSPs)
scaffold0043 (43-108)||(14686-14751)
[»] scaffold0032 (2 HSPs)
scaffold0032 (120-201)||(118543-118626)
scaffold0032 (17-108)||(117094-117185)
[»] scaffold1278 (1 HSPs)
scaffold1278 (142-201)||(631-691)
[»] scaffold0305 (1 HSPs)
scaffold0305 (15-108)||(1793-1887)
[»] scaffold0205 (1 HSPs)
scaffold0205 (85-179)||(7149-7245)
[»] scaffold0412 (1 HSPs)
scaffold0412 (45-104)||(2435-2494)
[»] scaffold0013 (1 HSPs)
scaffold0013 (122-187)||(8141-8208)
[»] scaffold0035 (1 HSPs)
scaffold0035 (74-108)||(33926-33960)
[»] scaffold0064 (1 HSPs)
scaffold0064 (52-109)||(9408-9465)
[»] scaffold1957 (1 HSPs)
scaffold1957 (142-201)||(847-907)
[»] scaffold0150 (2 HSPs)
scaffold0150 (200-228)||(20729-20757)
scaffold0150 (200-228)||(27558-27586)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 11883169 - 11883394
Alignment:
Q  3 aaggaagtaattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11883169 aaggaagtaattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgtatacactacttcactcatatgtgatttgt 11883268  T
Q  103 gtatatgcatagtcgagaccctagagtttatatacttagtttggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatcgaaaaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11883269 gtatatgcatagtcgagaccctagagtttatatacttagtttggttcaattgtctcattgttttaaagttgtaaaatgagagacagactttatcgaaaaa 11883368  T
Q  203 tgattcttttaagtcaattgtcttat 228  Q
    ||||||||||||||||||||||||||    
T  11883369 tgattcttttaagtcaattgtcttat 11883394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 13327476 - 13327690
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||    
T  13327476 ttatgatacgaatctttgcaaaacttgaaattaagtgagttggcctatgagacgttgatgtatacactactgcactcatatgtgacttgtgtatatacat 13327575  T
Q  113 agtcgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatcgaaaaatgattcttt 211  Q
     ||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||| ||    
T  13327576 ggtcgaggtcctagagtttatgtacttagttttggttcaattgtctcattgttttaaagttgtaaaaggagagacggac-ttatcggaaaatg-ttcctt 13327673  T
Q  212 taagtcaattgtcttat 228  Q
    |||| ||||| ||||||    
T  13327674 taagccaattatcttat 13327690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 51962070 - 51962287
Alignment:
Q  11 aattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgc 110  Q
    ||||| |||||||||||||||||||||| || |||||  ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |    
T  51962070 aattaggatacgaatctttgcaaaacttgaatttaagcaagttggcctatgagacgttgatgtatacactactgcactcatatgtgacttgtgtatatac 51962169  T
Q  111 atagtcgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatcgaaaaatgattct 209  Q
    || || |||  ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||| || |    
T  51962170 atggttgaggtcctagagtttatatactcagttttagttcaattgtctcattgttttaaagttgtaaaaggaaagatggactttatcggaaaatg-ttat 51962268  T
Q  210 tttaagtcaattgtcttat 228  Q
    ||| |||||||| ||||||    
T  51962269 tttgagtcaattatcttat 51962287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 8604158 - 8604058
Alignment:
Q  9 gtaattatgatacgaatctttgcaaaacttaaaatt-aagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtata 107  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  8604158 gtaattatgatacgaatctttgcaaaacttgaaatttaagtgagttggcctatgagacgttgatgtatacactactgcacttatatgtgatttgtgtata 8604059  T
Q  108 t 108  Q
    |    
T  8604058 t 8604058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 16260605 - 16260485
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||| |||    
T  16260605 ttatgatacgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgacttgtgtatatacat 16260506  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  16260505 ggttgaggtcctagagtttat 16260485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 18910213 - 18910093
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  18910213 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 18910114  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  18910113 ggttgaggtcctagagtttat 18910093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 53770184 - 53770064
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  53770184 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 53770085  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  53770084 ggttgaggtcctagagtttat 53770064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 18739025 - 18738900
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctcattgttttaaagttgtaaaatgaga 183  Q
    |||||||||||||| |  || ||| |||||||||| || |||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||| ||||    
T  18739025 cactcatatgtgatctaagtgtatacatagtcgaggcc-tagagtttatttacttggttttggttcatttgtctcattgttttaaagttgtaaaaggaga 18738927  T
Q  184 gacggactttatcgaaaaatgattctt 210  Q
    |||| |||||||||||||||| |||||    
T  18738926 gacgaactttatcgaaaaatggttctt 18738900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 8603915 - 8603795
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  8603915 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatatacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 8603816  T
Q  183 agacggactttatcgaaaaat 203  Q
    ||||| ||||| |||||||||    
T  8603815 agacgaactttgtcgaaaaat 8603795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 17937620 - 17937516
Alignment:
Q  122 cctagagtttatatacttagttt-ggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatcgaaaaatgattcttttaagtcaat 220  Q
    |||||||||||| || ||||||| ||| |||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||| ||||    
T  17937620 cctagagtttatttatttagttttggtgcaattgtctcattgttttaaagttgtgaaaggagagatggactttatcggaaaat-attcttttaagccaat 17937522  T
Q  221 tgtctt 226  Q
    ||||||    
T  17937521 tgtctt 17937516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 40040101 - 40040211
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  |||||| |||||||||| ||||||| ||||| ||||| |||| |||||| |||||||| |||||||||||||||||||||||    
T  40040101 cactcatatgtgatctaagtatatacatagtcgaggccctagaatttatttacttggttttggttcatttgtctcaattgttttaaagttgtaaaatgag 40040200  T
Q  183 agacggacttt 193  Q
    ||||| |||||    
T  40040201 agacgaacttt 40040211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 15549695 - 15549585
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagt-ttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||||||||| || |||||||| ||||||| ||| ||||| ||||||| ||||||    
T  15549695 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatatacttggtattggttcatttgtctcaattattttagagttgtagaatgag 15549596  T
Q  183 agacggacttt 193  Q
    ||||| |||||    
T  15549595 agacgaacttt 15549585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 37917352 - 37917466
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagtttg-gttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  |||||| |||||||||  ||||| | ||||| ||||| ||||  ||||| |||||||| |||||||||||||||||||||||    
T  37917352 cactcatatgtgatctaagtatatacatagtcgaagccctataatttatttacttggtttttgttcatttgtctcaattgttttaaagttgtaaaatgag 37917451  T
Q  183 agacggactttatcg 197  Q
    ||||| |||||||||    
T  37917452 agacgaactttatcg 37917466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 17937865 - 17937800
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||||||||| ||||||||| || || |||| ||||||||||||||||||||||||    
T  17937865 ttaagtgagttggcctatgaaacgttgatgtatgcattactacactcatatgtgatttgtgtatat 17937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 11823539 - 11823474
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||| ||| ||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  11823539 ttaaatgaattggcctatgaaacgttgatgtatacactactgcactcatatgttatttgtgtatat 11823474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 18739234 - 18739169
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||||||||||  |||||||| || ||||||| ||||| ||||||||||||||||||    
T  18739234 ttaagtgagttggcctatgaagcgttgatgtatgcactactacactcttatgtgatttgtgtatat 18739169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 25104976 - 25105069
Alignment:
Q  110 catagtcgagaccctagagtttatatacttag-tttggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||| ||||||||||||| | ||| | ||||||||| |||||||| ||| |||||||||||||||||||||| | ||||| |||||||    
T  25104976 catagtcgaggccctagagtttatttccttggatttggttcatttgtctcaattgctttaaagttgtaaaatgagagatgaactttgtcgaaaa 25105069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 17759317 - 17759434
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| ||||||||||  | |||||||||| | ||| |||| ||||||||||||||| || |||||||||||||  |||||    
T  17759317 cactcatatgtgatctaagtgtatacatagtcgagggc-tagagtttattttcttggttttggttcaattgtctcaattattttaaagttgtattatgag 17759415  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  17759416 agacgaactttgtcgaaaa 17759434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 19060637 - 19060754
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| ||||||||||  | |||||||||| | ||| |||| ||||||||||||||| || |||||||||||||  |||||    
T  19060637 cactcatatgtgatctaagtgtatacatagtcgagggc-tagagtttattttcttggttttggttcaattgtctcaattattttaaagttgtattatgag 19060735  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  19060736 agacgaactttgtcgaaaa 19060754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 19659203 - 19658981
Alignment:
Q  6 gaagtaattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgta 105  Q
    |||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| | || ||||||| ||||||||||||| |||||||    
T  19659203 gaagtatttatgatacgaatcattgcaaaacttgaaattaagtgagttggcctgtgagacgttgacgtatgcactactgcactcatatgtgacttgtgta 19659104  T
Q  106 tatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatcgaaaaatg 204  Q
    ||| ||| || |||  ||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  19659103 tatacatggttgaggtcctaaggtttatatacttagttttggttcaattgtctcattgttttaaagttataaaaggagagacggactttatcggaaaatg 19659004  T
Q  205 attcttttaagtcaattgtcttat 228  Q
     |||||||||||||||||||||||    
T  19659003 -ttcttttaagtcaattgtcttat 19658981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 8943068 - 8942947
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||    
T  8943068 attatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatataca 8942969  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  8942968 tggttgaggtcctagagtttat 8942947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 12636902 - 12637023
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||    
T  12636902 attatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatataca 12637001  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  12637002 tggttgaggtcctagagtttat 12637023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 12642656 - 12642777
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||    
T  12642656 attatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatataca 12642755  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  12642756 tggttgaggtcctagagtttat 12642777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 42178996 - 42179116
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  42178996 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 42179095  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  42179096 ggttgaggtcctagagtttat 42179116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 21275159 - 21275279
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||| |||    
T  21275159 ttatgatatgaatctttgtaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgacttgtgtatatacat 21275258  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  21275259 ggttgaggtcctagagtttat 21275279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 3799649 - 3799754
Alignment:
Q  24 atctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagtcgagaccc 123  Q
    ||||||||||||||| || |||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||| || |||  ||    
T  3799649 atctttgcaaaacttgaatttaagtgaattggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacatggttgaggtcc 3799748  T
Q  124 tagagt 129  Q
    ||||||    
T  3799749 tagagt 3799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 43642236 - 43642152
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||  ||| ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  43642236 ctttgcaaaactttgaaatttaagtgagtttgcctatgagacgttgatgtatacactactgcactcatatgtgatttgtgtatat 43642152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 22577447 - 22577365
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtat 106  Q
    |||||||||||||  ||| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  22577447 ctttgcaaaactttgaaatttaagtgaattggcctatgagacgttgatgtatacactactgcactcatatgtgatttgtgtat 22577365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 19434246 - 19434308
Alignment:
Q  46 agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  19434246 agtgagttggcctatgagacgttgatgtatacactactgcactcatatgtgatttgtgtatat 19434308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 19434452 - 19434570
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || |||||||||||||| ||||||||||||||||||| | ||||||||| ||||||| ||| ||||| ||||||| ||||||    
T  19434452 cactcatatgtgatctaagtgtatgcatagtcgaggccctagagtttatatacttggttttggttcatttgtctcaattattttagagttgtagaatgag 19434551  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  19434552 agacgaactttgtcgaaaa 19434570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 29113725 - 29113633
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||| ||||||   | ||||||||||||||||||||||||    
T  29113725 gatacgaa-ctttgcaaaactttgaaatttaagtgagttggcctatgagacgttgatgtatacacgtatgcactcatatgtgatttgtgtatat 29113633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 19667825 - 19667918
Alignment:
Q  16 tgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||| |||||||||||||  ||| |||||| | ||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||    
T  19667825 tgatacgaa-ctttgcaaaactttgaaatttaagtcaattggcctataagacgttgatgtatacactactgcactcatatgtgatttatgtatat 19667918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 22332011 - 22331901
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||||||||||| ||| | |||||||||||| |||||    
T  22332011 cactcatatgtgatctaagtttatacatagtcgaggccctagagtttatttacttggttttggttcaattgtctcaattatgttaaagttgtaatatgag 22331912  T
Q  183 agacggacttt 193  Q
    ||||| |||||    
T  22331911 agacgaacttt 22331901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 43641983 - 43641890
Alignment:
Q  110 catagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||| ||||||||||||||||||| | ||| ||||| ||||||| ||| ||||| ||||||| ||||||||||| ||||| |||||||    
T  43641983 catagtcgaggccctagagtttatatacttggtttttgttcatttgtctcaattattttagagttgtagaatgagagacgaactttgtcgaaaa 43641890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 24841065 - 24840973
Alignment:
Q  111 atagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    ||||||||| ||||||||||||| || || | ||||||||||||||||| ||| |||||||||| |||||||||| ||| ||||| |||||||    
T  24841065 atagtcgaggccctagagtttatttaattggttttggttcaattgtctcaattattttaaagttctaaaatgagaaacgaactttgtcgaaaa 24840973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 7320632 - 7320557
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctca 159  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||||||||| | ||||||||| ||||||||    
T  7320632 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatatacttggttttggttcatttgtctca 7320557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 29113499 - 29113396
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctcat-tgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||| ||| ||| ||||||||| ||||| |||| |||||| ||||||||  | ||||||||||||||||||||    
T  29113499 cactcatatgtgatctaagtttatacatagttgagccccaagagtttatttacttggttttggttcatttgtctcaactattttaaagttgtaaaatgag 29113400  T
Q  183 agac 186  Q
    ||||    
T  29113399 agac 29113396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 20832916 - 20833128
Alignment:
Q  16 tgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagt 115  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||| |||||||||| |||  |    
T  20832916 tgatacgaagctttgcaaaacttgaaattaagtgaggtggcctatgagacgttgacgtatacactactgcactcatatgtgacttgtgtatatacatgat 20833015  T
Q  116 cgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatcgaaaaatgattcttttaa 214  Q
     |||  ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||    
T  20833016 ggaggtcctagggtttatatacttagttttggttcaattgtctcattgttttaaagttgtaaaaggaaagacggactttatcggaaaatg-ttcttttaa 20833114  T
Q  215 gtcaattgtcttat 228  Q
    | ||||||||||||    
T  20833115 gccaattgtcttat 20833128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 9731418 - 9731539
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||    
T  9731418 attatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatataca 9731517  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  9731518 tggttgaggtcctagagtttat 9731539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 14342394 - 14342496
Alignment:
Q  6 gaagtaattatgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtg 103  Q
    |||||||||||||||| |||||| |||||||||  ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  14342394 gaagtaattatgatacaaatctt-gcaaaactttgaaatttaagtgagttggcctatgagacgttgatgtatacactactgcactcatatgtgatttgtg 14342492  T
Q  104 tata 107  Q
    ||||    
T  14342493 tata 14342496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 22111294 - 22111192
Alignment:
Q  7 aagtaattatgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgt 104  Q
    |||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  22111294 aagtaattatgatacgaatctt-gcaaaactttgaaatttaagtgagttggcctatgagacattgatgtatacactactgcactcatatgtgatttgtgt 22111196  T
Q  105 atat 108  Q
    ||||    
T  22111195 atat 22111192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 21109046 - 21108943
Alignment:
Q  6 gaagtaattatgatacgaatctttgcaaaacttaaaa--ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtg 103  Q
    ||||||||||||||||||||||| |||||||||  ||  |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |||    
T  21109046 gaagtaattatgatacgaatctt-gcaaaactttgaagtttaagtgagttggcctatgagacgttgatgtatacactactgcactcaaatgtgattggtg 21108948  T
Q  104 tatat 108  Q
    |||||    
T  21108947 tatat 21108943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 21108801 - 21108683
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagt-ttggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||  ||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||||||||||    
T  21108801 cactcatatgtgatctaagtgtatacatagtcgaagccctagagtttatttacttggtattggttcatttgtctcaattgttttaaagttgtaaaatgag 21108702  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  21108701 agacgaactttgtcgaaaa 21108683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 14342641 - 14342759
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||||||||||| ||| |||||||||||||| |||||    
T  14342641 cactcatatgtgatataagtgtatccatagtcgaggccctagagtttatttacttggttttggttcaattgtctcaattattttaaagttgtaatatgag 14342740  T
Q  183 agacggactttatcgaaaa 201  Q
    | ||| ||||| |||||||    
T  14342741 atacgaactttgtcgaaaa 14342759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 24226459 - 24226577
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||||||||| | ||||||||| ||||||| ||| ||||| ||||||| ||||||    
T  24226459 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatatacttggttttggttcatttgtctcaattattttagagttgtagaatgag 24226558  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  24226559 agacgaactttgtcgaaaa 24226577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 20313970 - 20313887
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||  ||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  20313970 ctttgcaaaactttgaaatttaagtgagttggcc-atgagacgttgatgtatacattactgcactcatatgtgatttgtgtatat 20313887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 24226251 - 24226316
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||    
T  24226251 ttaagtgagttggcctatgagacgttgatgtatacactactgcactgatatgtgatttttgtatat 24226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 33150282 - 33150374
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgta 175  Q
    ||||||||||||||||  || ||| |||||||||| ||||| ||||||||||||| | ||||||||| ||||||| ||| ||||| |||||||    
T  33150282 cactcatatgtgatttaagtgtatacatagtcgaggccctaaagtttatatacttggttttggttcatttgtctcaattattttagagttgta 33150374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 431490 - 431461
Alignment:
Q  199 aaaatgattcttttaagtcaattgtcttat 228  Q
    ||||||||||||||||||||||||||||||    
T  431490 aaaatgattcttttaagtcaattgtcttat 431461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 25123603 - 25123417
Alignment:
Q  11 aattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgc 110  Q
    ||||| |||||||||||||||||||||| || |||||  ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |    
T  25123603 aattaggatacgaatctttgcaaaacttgaatttaagcaagttggcctatgagacgttgatgtatacactactgcactcatatgtgacttgtgtatatac 25123504  T
Q  111 atagtcgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgagagacggactttatc 196  Q
    || || |||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  25123503 atggttgaggtcctagagtttatatactcagttttggttcaattgtctcattgttttaaagttgtaaaaggaaagatggactttatc 25123417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 370309 - 370188
Alignment:
Q  11 aattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgc 110  Q
    |||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |    
T  370309 aattatgatatga-tctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatac 370211  T
Q  111 atagtcgagaccctagagtttat 133  Q
    || || |||  ||||||||||||    
T  370210 atggttgaggtcctagagtttat 370188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 14251932 - 14252053
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||| ||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||| ||    
T  14251932 attataatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgctctcatatgtgatttgtgtatataca 14252031  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  14252032 tggttgaggtcctagagtttat 14252053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 15926789 - 15926668
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||||||| ||||||||||||||||| |  |||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||    
T  15926789 attatgatatgaatctttgcaaaacttgagtttaagtgagttggcctatgaaacgatgatgtatacactactgcactcatatgtgatttgtgtatataca 15926690  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  15926689 tggttgaggtcctagagtttat 15926668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 2191287 - 2191407
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||  |||    
T  2191287 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgacttgtgtatacacat 2191386  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  2191387 ggtggaggtcctagagtttat 2191407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 21675597 - 21675689
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  21675597 gatacgaa-ctttgcaaaactttgaaatttaagtgagttggcctatgagacgttgatggatacactactgcactcatatgtgattggtgtatat 21675689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 2028086 - 2027991
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| ||| |||||||||| ||||||||||||| || |||||||    
T  2028086 ttatgatatgaatctttgcaaaacttgaatttaagagagttggcctatgaaacgttaatgtatacactactgcactcatatgtgacttatgtatat 2027991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 46473450 - 46473358
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||| |||||||    
T  46473450 gatacgaa-ctttgcaaaactttgaaatttaagtgagttggcctatgaaacgttgatgtatacactactgaactcatatgtgatttatgtatat 46473358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 8564500 - 8564604
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| | ||||| ||||||||||||||||| ||| |||||||||||||| |||||    
T  8564500 cactcatatgtgatctaagtttatacatagtcgaggccctagagtttattttcttagttttggttcaattgtctcaattattttaaagttgtaatatgag 8564599  T
Q  183 agacg 187  Q
    |||||    
T  8564600 agacg 8564604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 15978979 - 15979082
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||||| ||| ||||||||||||||||||||    
T  15978979 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 15979078  T
Q  183 agac 186  Q
    ||||    
T  15979079 agac 15979082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 8564304 - 8564366
Alignment:
Q  46 agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||||    
T  8564304 agtgagttggcctatgaaacgttgatgtatacactactgtactcatatgtgatttgtgtatat 8564366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 18080413 - 18080506
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagtcg 117  Q
    |||||||||||||  ||| |||||| ||| |||||||||||| |||||| |||||||| | |||||||||||||||||||||||| | ||||||    
T  18080413 ctttgcaaaactttgaaatttaagtaagtcggcctatgagacattgatgtatacactaatgcactcatatgtgatttgtgtatattcttagtcg 18080506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 46473214 - 46473096
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatactt-agtttggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| || |||||||||| ||||| | ||| |||||||||||||| || |||||||||||||| |||||    
T  46473214 cactcatatgtgatctaagtttatacatagtcgaggccttagagtttatttacttgatttttgttcaattgtctcaattattttaaagttgtaatatgag 46473115  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  46473114 agacgaactttgtcgaaaa 46473096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 39292423 - 39292515
Alignment:
Q  15 atgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||| |||| ||||| |||||  |||||||| ||||||||    
T  39292423 atgatacgaa-ctttgcaaaactttgaaatttaagtgagttggcctatgagacgttgatgtatactctactgcactc--atgtgattggtgtatat 39292515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 3193061 - 3193180
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctca--ttgttttaaagttgtaaaatga 181  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||||||  |  ||||||||||||||||||     
T  3193061 cactcatatgtgatcttagtgtatacatagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattatttttaaagttgtaaaatgt 3193160  T
Q  182 gagacggactttatcgaaaa 201  Q
    |||||| ||||| |||||||    
T  3193161 gagacgaactttgtcgaaaa 3193180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 15978774 - 15978836
Alignment:
Q  46 agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||| |||||||||||||||    
T  15978774 agtgagttggcctatgaaacgttgatttatacactactgcactcataagtgatttgtgtatat 15978836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 19382660 - 19382598
Alignment:
Q  46 agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||| |||||||||||||||||||||  ||||||||| || |||||||||||||||||||||    
T  19382660 agtgatttggcctatgagacgttgatgtgtacactactgcagtcatatgtgatttgtgtatat 19382598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 21539112 - 21539222
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    ||||| |||||||| |  || ||| ||||||||||  |||||||||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  21539112 cactcttatgtgatctaagtctatacatagtcgaggtcctagagtttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 21539211  T
Q  183 agacggacttt 193  Q
    ||||| |||||    
T  21539212 agacgaacttt 21539222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 21675837 - 21675943
Alignment:
Q  89 catatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagtttgg-ttcaattgtctca-ttgttttaaagttgtaaaatgagagac 186  Q
    |||||||||| |  || ||| |||||| ||||||||||||||||| || || |||| | |||| |||||||| |||||||||||||||||||||||||||    
T  21675837 catatgtgatctaagtgtatacatagtagagaccctagagtttatttatttggttttgattcatttgtctcaattgttttaaagttgtaaaatgagagac 21675936  T
Q  187 ggacttt 193  Q
    | |||||    
T  21675937 gaacttt 21675943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 14275598 - 14275686
Alignment:
Q  17 gatacgaatctttgcaaaactt-aaaat-taagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgt 104  Q
    |||||||| |||||||||| || ||||| ||||||||||||| ||||||||||||||| ||||||||||  |||| ||||||||||||||    
T  14275598 gatacgaa-ctttgcaaaattttaaaatgtaagtgagttggcatatgagacgttgatgtatacactactgaactcgtatgtgatttgtgt 14275686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 4597453 - 4597547
Alignment:
Q  15 atgatacgaatctttgcaaaactta--aaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||| |||||||||||||   || |||| ||| ||| |||||||||| |||| | | |||||||||||||||||||||||||||||||||    
T  4597453 atgatacgaa-ctttgcaaaactttgtaatttaattgatttgacctatgagacattgaagtacacactacttcactcatatgtgatttgtgtatat 4597547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 21538906 - 21538968
Alignment:
Q  46 agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||||||| ||||||||| |||||||||| | |||||||  |||||||||||||    
T  21538906 agtgagttggcctatgaaacgttgatgtatacactactgcgctcatatacgatttgtgtatat 21538968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 28719745 - 28719628
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| || |||||||||| ||||| |||| |||||| |||||||| || |||||||||||||| |||||    
T  28719745 cactcatatgtgatctaagtgtatacatagtcgaggcc-tagagtttatttacttggttttggttcatttgtctcaattattttaaagttgtaatatgag 28719647  T
Q  183 agacggactttatcgaaaa 201  Q
    ||| | ||||| |||||||    
T  28719646 agatgaactttgtcgaaaa 28719628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 39292658 - 39292776
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||| | |  || ||| |||||||||| ||| | | ||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  39292658 cactcatatgtggtctaagtgtatacatagtcgaggccccataatttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 39292757  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  39292758 agacgaactttgtcgaaaa 39292776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 44306098 - 44306216
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || |||  |||||| || ||||||||||||| ||||| |||| |||| | |||||||| || |||||||||||||| |||||    
T  44306098 cactcatatgtgatataagtgtatatatagtcaaggccctagagtttatttacttggttttggttaatttgtctcaattattttaaagttgtaatatgag 44306197  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  44306198 agacgaactttgtcgaaaa 44306216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 18080597 - 18080715
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagtttgg-ttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||| ||||||| | | ||| ||| ||||||||||||||  || ||||| ||||| |||| | |||| |||||||| || ||||||||||||||| ||||    
T  18080597 cacttatatgtggtctatgtgtatacatagtcgagacccctgaatttatttacttggttttgcttcatttgtctcaattattttaaagttgtaaattgag 18080696  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  18080697 agacgaactttgtcgaaaa 18080715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 14498 - 14618
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  14498 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 14597  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  14598 ggttgaggtcctagagtttat 14618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 22544 - 22628
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtga 97  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  22544 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtga 22628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 94119 - 93999
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  94119 ttatgatacgaatctttgcaaaacctgaatttaagtgagttggcctatgaaacgttgatgtatacactacttcactcatatgtgatttgtgtatatacat 94020  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||   |||||||||||    
T  94019 ggttgaggttctagagtttat 93999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 16231112 - 16230992
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  16231112 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 16231013  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  16231012 ggttgaggtcctagagtttat 16230992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 18003615 - 18003724
Alignment:
Q  24 atctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagtcgagaccc 123  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||| || |||  ||    
T  18003615 atctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacatggttgaggtcc 18003714  T
Q  124 tagagtttat 133  Q
    ||| ||||||    
T  18003715 tagggtttat 18003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 23976992 - 23976896
Alignment:
Q  11 aattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  23976992 aattatgatatga-tctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatat 23976896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 13621745 - 13621865
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| ||  ||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||| |||    
T  13621745 ttatgatatgaatctttgcaaaacttgaatctaagtgagttggcctatgaaacgttaatgtatacactactgcactcatatgtgacttgtgtatatacat 13621844  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  13621845 ggttgaggtcctagagtttat 13621865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 15735823 - 15735931
Alignment:
Q  25 tctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagtcgagaccct 124  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||| ||| || |||  |||    
T  15735823 tctttgcaaaacttgaacttaagtgagttggcctatgaaacgttgatgtatacattactgcactcatatgtgatttgtgtatatacatggttgaggtcct 15735922  T
Q  125 agagtttat 133  Q
    |||||||||    
T  15735923 agagtttat 15735931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 25650380 - 25650285
Alignment:
Q  13 ttatgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtata 107  Q
    |||||||||||||||| |||||||||  ||| |||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  25650380 ttatgatacgaatctt-gcaaaactttgaaatttaagtgaattggcctatgagacgttgatgtatacactactgcacccatatgtgatttgtgtata 25650285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 17857408 - 17857526
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  17857408 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 17857507  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  17857508 agacgaactttgtcgaaaa 17857526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 23220993 - 23220875
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |   | ||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || |||||||||||||| |||||    
T  23220993 cactcatatgtgatctaattttatacatagtcgagaccctagagtttatttacttggttttggttcaattgtctcaattattttaaagttgtaatatgag 23220894  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  23220893 agacgaactttgtcgaaaa 23220875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 23221229 - 23221137
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  | | |||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||    
T  23221229 gatacgaa-ctttgcaaaactttgagatttaagtgagttggcctatgaaaagttgatgtatacactactacactcatatgtgatttgtgtatat 23221137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 26506038 - 26505921
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  |||||| ||| |||||| ||||||||||||| ||||| |||| || ||| |||||||| || | ||||||||||||||||||    
T  26506038 cactcatatgtgatctaagtatatacattgtcgaggccctagagtttatttacttggttttggctca-ttgtctcaattatattaaagttgtaaaatgag 26505940  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  26505939 agacgaactttgtcgaaaa 26505921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 4172640 - 4172700
Alignment:
Q  142 tttggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||    
T  4172640 tttggttcaattgtctcaattgtgttaaagttgtaaaatgatagacgaactttgtcgaaaa 4172700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 4228249 - 4228309
Alignment:
Q  142 tttggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||    
T  4228249 tttggttcaattgtctcaattgtgttaaagttgtaaaatgatagacgaactttgtcgaaaa 4228309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 5485357 - 5485412
Alignment:
Q  52 ttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtata 107  Q
    |||||||||||||| ||  || ||| |||||| |||||||||||||||||||||||    
T  5485357 ttggcctatgagacatttgtgtatatactactgcactcatatgtgatttgtgtata 5485412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 10974149 - 10974086
Alignment:
Q  52 ttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagt 115  Q
    ||||||||||||||||  ||| |||||||||| ||||||||||| | |||||| ||||| ||||    
T  10974149 ttggcctatgagacgtatatgtatacactactgcactcatatgtaacttgtgtgtatgcttagt 10974086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 7133081 - 7133201
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  7133081 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 7133180  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  7133181 ggttgaggtcctagagtttat 7133201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 15273391 - 15273511
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  15273391 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 15273490  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  15273491 ggttgaggtcctagagtttat 15273511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 19999945 - 19999824
Alignment:
Q  11 aattatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgc 110  Q
    |||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |    
T  19999945 aattatgatatga-tctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatac 19999847  T
Q  111 atagtcgagaccctagagtttat 133  Q
    || || |||  ||||||||||||    
T  19999846 atggttgaggtcctagagtttat 19999824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 54364446 - 54364564
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  ||||| ||||||||||| ||||||| ||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  54364446 cactcatatgtgatctaagtatacgcatagtcgaggccctagaatttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 54364545  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  54364546 agacgaactttgtcgaaaa 54364564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 17866288 - 17866226
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgta 105  Q
    |||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  17866288 ttaagtgatttggcctatgagacgttgatgtatacactaatgcactcatatgtgatttgtgta 17866226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 10238186 - 10238277
Alignment:
Q  17 gatacgaatctttgcaaaacttaaaatt-aagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  |||| ||||||||||||||||| ||| |||||| |||||||| | ||||||||||||||| ||||||||    
T  10238186 gatacgaa-ctttgcaaaactttgaatttaagtgagttggcctatgggaccttgatgtatacactattgcactcatatgtgattggtgtatat 10238277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 10238420 - 10238557
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagt-ttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| || || ||||| ||||||| ||| ||||||||||||||||||||    
T  10238420 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttggtgttagttcatttgtctcaattattttaaagttgtaaaatgag 10238519  T
Q  183 agacggactttatcgaaaaatgattcttttaagtcaatt 221  Q
    ||  | ||||| || ||||||| |||||| ||| |||||    
T  10238520 agttgaactttgtc-aaaaatggttctttaaagccaatt 10238557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 12134663 - 12134744
Alignment:
Q  122 cctagagtttatatactt-agtttggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||||| ||||| | |||||||||||||||||| || ||||||||||||||  ||||||||| ||||| |||||||    
T  12134663 cctagagtttatttacttgattttggttcaattgtctcaattattttaaagttgtaatttgagagacgaactttgtcgaaaa 12134744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 9565859 - 9565805
Alignment:
Q  50 agttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgt 104  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||||||| ||||||    
T  9565859 agttagcctatgagacgtttatgcatacactactgcacgcatatgtgacttgtgt 9565805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 12344932 - 12345034
Alignment:
Q  15 atgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    ||||||||||| ||| ||||||||  ||| | |||||| ||||||||||||| ||| ||| ||||| |||| || |||||||||| |||||| ||||| |    
T  12344932 atgatacgaattttt-caaaactttgaaattaaagtgaattggcctatgagatgtttatgtatacattactgcattcatatgtgacttgtgtgtatgctt 12345030  T
Q  113 agtc 116  Q
    ||||    
T  12345031 agtc 12345034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 12335486 - 12335557
Alignment:
Q  39 aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgc 110  Q
    ||||| |||||| ||| ||||||||| ||| ||| |||||||||| ||||||||||||| || ||| |||||    
T  12335486 aaaataaagtgaattgccctatgagatgtttatgtatacactactgcactcatatgtgacttttgtgtatgc 12335557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 41257452 - 41257491
Alignment:
Q  188 gactttatcgaaaaatgattcttttaagtcaattgtcttat 228  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  41257452 gactttatcgaaaa-tgattcttttaagtcaattatcttat 41257491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 20825862 - 20825982
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  20825862 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatatacat 20825961  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  20825962 ggttgaggtcctagagtttat 20825982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 76701 - 76792
Alignment:
Q  17 gatacgaatctttgcaaaacttaaaatta-agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| ||||||||||||| | |||  ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  76701 gatacgaa-ctttgcaaaacttgagatttcagtgagttggcctatgaaacgttgatgtatatactactgcactcatatgtgatttgtgtatat 76792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 76936 - 77054
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||| ||||||||||| ||| |||||||||||||| |||||    
T  76936 cactcatatgtgatctaagtttatacatagtcgaggccctagagtttatttacttggttttggctcaattgtctcaattattttaaagttgtaatatgag 77035  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||  ||||| |||||||    
T  77036 agacaaactttgtcgaaaa 77054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 9785101 - 9785199
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctcattgttttaaagttgtaaaatgaga 183  Q
    |||||||||||||| |  || ||| | |||||||| || |||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  9785101 cactcatatgtgatctaagtgtatacgtagtcgaggcc-tagagtttatttacttggttttggttcaattgtctcattgttttaaagttgtgaaatgaga 9785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 52400543 - 52400478
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||| | | ||||||||||| |||||||||| |||||| || | |||||| |||||    
T  52400543 ttaagtgagttggcatgtaagacgttgatgtatacactactgcactcaaatataatttgtatatat 52400478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 20822202 - 20822170
Alignment:
Q  161 tgttttaaagttgtaaaatgagagacggacttt 193  Q
    ||||||||||||||||||||||||||| |||||    
T  20822202 tgttttaaagttgtaaaatgagagacgaacttt 20822170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 3432316 - 3432437
Alignment:
Q  12 attatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgca 111  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||  |    
T  3432316 attatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatataga 3432415  T
Q  112 tagtcgagaccctagagtttat 133  Q
    | || |||  ||||||||||||    
T  3432416 tggttgaggtcctagagtttat 3432437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 16039992 - 16040112
Alignment:
Q  13 ttatgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcat 112  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||| |||    
T  16039992 ttatgatatgaatctttgcaaaacttgaatttaagtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgacttgtgtatatacat 16040091  T
Q  113 agtcgagaccctagagtttat 133  Q
     || |||  ||||||||||||    
T  16040092 ggttgaggtcctagagtttat 16040112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 25757516 - 25757424
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  | | |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  25757516 gatacgaa-ctttgcaaaactttgagatttaagtgagttggcatatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatat 25757424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 45559857 - 45559949
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| |||||||||||||  | | |||||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||    
T  45559857 gatacgaa-ctttgcaaaactttgagatttaagtgagttggcctatgaaacgttgatgtatacactactgcattcatatgtgatttgtgtatat 45559949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 17501219 - 17501102
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagtttggttcaattgtctc-attgttttaaagttgtaaaatgaga 183  Q
    |||||||||||||| |  || ||| |||||||||| | ||||||||||||||||| | ||||||||  |||||| ||| ||||| |||||||||||||||    
T  17501219 cactcatatgtgatctaagtgtatacatagtcgaggcactagagtttatatacttggattggttcatctgtctcaattattttagagttgtaaaatgaga 17501120  T
Q  184 gacggactttatcgaaaa 201  Q
    |||| ||||| |||||||    
T  17501119 gacgaactttgtcgaaaa 17501102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 19332515 - 19332608
Alignment:
Q  110 catagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||| ||||||||||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||||||||| || || |||||||    
T  19332515 catagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgagagacgaaccttgtcgaaaa 19332608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 22313185 - 22313102
Alignment:
Q  27 tttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||  ||| |||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||| || |||||    
T  22313185 tttgcaaaactttgaaatttaagtgagttggcctgtgagacgttgatgtatacgctactgcactcatatgtgattggtatatat 22313102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 25295496 - 25295406
Alignment:
Q  17 gatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtat 106  Q
    |||||||| |||||||||||||  | | |||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||| |||||    
T  25295496 gatacgaa-ctttgcaaaactttgagatttaagtgagttggcatatgaaacgttgatgtatacactactgcactcatatgtgatttatgtat 25295406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 19332290 - 19332355
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||||||||| || |||||| |||||||||| ||||||||| ||||||| ||||||    
T  19332290 ttaagtgagttggcctatgaaacattgatgtatacactactgcactcatatatgatttgagtatat 19332355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 11543802 - 11543687
Alignment:
Q  88 tcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgagaga 185  Q
    ||||||||||| |  || ||| |||||||||| ||||||| ||||  ||||| |||| |||||| |||||||| || ||||||||||||||| |||||||    
T  11543802 tcatatgtgatctaagtgtatacatagtcgaggccctagaatttaattacttggttttggttcatttgtctcaattattttaaagttgtaaattgagaga 11543703  T
Q  186 cggactttatcgaaaa 201  Q
    || ||||| |||||||    
T  11543702 cgaactttgtcgaaaa 11543687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 24383903 - 24383840
Alignment:
Q  52 ttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagt 115  Q
    |||||||||||||||||  || |||||||| | |||||||||||||||||||||||||| ||||    
T  24383903 ttggcctatgagacgtttgtgtatacactaatgcactcatatgtgatttgtgtatatgcttagt 24383840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 20176859 - 20176977
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || |||  |||||| || ||||||||||||| ||||| |||| |||| | |||||||| || |||||||||||||| |||||    
T  20176859 cactcatatgtgatataagtgtatatatagtcaaggccctagagtttatttacttggttttggttaatttgtctcaattattttaaagttgtaatatgag 20176958  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  20176959 agacgaactttgtcgaaaa 20176977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 20221586 - 20221704
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || |||  |||||| || ||||||||||||| ||||| |||| |||| | |||||||| || |||||||||||||| |||||    
T  20221586 cactcatatgtgatataagtgtatatatagtcaaggccctagagtttatttacttggttttggttaatttgtctcaattattttaaagttgtaatatgag 20221685  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  20221686 agacgaactttgtcgaaaa 20221704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 22312959 - 22312842
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| |||| |||||  |||| ||| || ||||||||||||| ||||||    
T  22312959 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatctacttggttttggttct-ttgtatcaattattttaaagttgtagaatgag 22312861  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  22312860 agacgaactttgtcgaaaa 22312842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 34012940 - 34013032
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgta 175  Q
    ||||||||||||||||  || ||| |||||||||| ||||| ||||||||||||| | ||||||||| ||||||| ||| ||||| |||||||    
T  34012940 cactcatatgtgatttaagtgtatacatagtcgaggccctaaagtttatatacttggttttggttcatttgtctcaattattttagagttgta 34013032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 45560092 - 45560209
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||||| |||||| | |||||||  ||  ||    
T  45560092 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattgttct-aagttgtgtaagtag 45560190  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||||||||| |||||||    
T  45560191 agacggactttgtcgaaaa 45560209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 25295261 - 25295144
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgaga 183  Q
    ||||| |||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||| |||||||| |  ||  |||||||  |||||||    
T  25295261 cactcctatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattattctaagttgtgtaatgaga 25295162  T
Q  184 gacggactttatcgaaaa 201  Q
    |||| ||||| |||||||    
T  25295161 gacgaactttgtcgaaaa 25295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 25757281 - 25757164
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctcattgttttaaagttgtaaaatgaga 183  Q
    ||||| |||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||| |||||||| |  ||  |||||||  |||||||    
T  25757281 cactcctatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattattctaagttgtgtaatgaga 25757182  T
Q  184 gacggactttatcgaaaa 201  Q
    |||| ||||| |||||||    
T  25757181 gacgtactttgtcgaaaa 25757164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 1120 - 1229
Alignment:
Q  24 atctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagtcgagaccc 123  Q
    ||||||||||||||| || |||||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||| ||| || |||  ||    
T  1120 atctttgcaaaacttgaatttaagtgagttggcctatgaaacattgatgtatacactactgcactcatatgtgatttgtgtatatacatggttgaggtcc 1219  T
Q  124 tagagtttat 133  Q
    ||||||||||    
T  1220 tagagtttat 1229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 76511 - 76408
Alignment:
Q  6 gaagtaattatgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtg 103  Q
    ||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||    
T  76511 gaagtaattatgatacgaatctt-gcaaaactttgaaatttaagtgagttggcctatgtgacattgatgtatacactactgcactcatatgtgatttgtg 76413  T
Q  104 tatat 108  Q
    |||||    
T  76412 tatat 76408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 76244 - 76147
Alignment:
Q  106 tatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctcat-tgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    ||||||||||||||||||||||| |||| ||||| |||| |||||| ||||||||  | ||||||||||||||||||||||||| || || |||||||    
T  76244 tatgcatagtcgagaccctagagcttatttacttggttttggttcatttgtctcaactattttaaagttgtaaaatgagagacgaaccttgtcgaaaa 76147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 10314 - 10249
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10314 ttaagtgagttggcctatgagacgttgatgtatacactacttcactcatatgtgatttgtgtatat 10249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 10105 - 9995
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| | |||||||| ||||||||||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  10105 cactcatatgtgatctaagtgtatacgtagtcgaggccctagagtttatttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 10006  T
Q  183 agacggacttt 193  Q
    ||||| |||||    
T  10005 agacgaacttt 9995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 187957 - 188074
Alignment:
Q  16 tgatacgaatctttgcaaaacttaaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatgcatagt 115  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||| |||||||||| ||||||||| ||| |||||||||| ||| ||    
T  187957 tgatatgaatctttgcaaaacttgaatttaagcgagttggcctatgaaacgttgatgtatacactactgcactcatatatgacttgtgtatatacatggt 188056  T
Q  116 cgagaccctagagtttat 133  Q
     |||  ||||||||||||    
T  188057 tgaggtcctagagtttat 188074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 35625 - 35718
Alignment:
Q  16 tgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  35625 tgatacgaa-ctttgcaaaactttgaaatttaagtgagttggcctatgagacgttgatgtatacactactgcactcatatttgatttgtgtatat 35718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 4023 - 4107
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||  ||| ||||||||||||||||||||||| |||||| ||||||||||  |||||||||| |||||| |||||    
T  4023 ctttgcaaaactttgaaatttaagtgagttggcctatgagacattgatgtatacactactgaactcatatgttatttgtttatat 4107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 4251 - 4369
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  |  ||| |||||||||| | ||||||||||||||||| | ||| ||||| ||||||| ||| ||||| ||||||| ||||||    
T  4251 cactcatatgtgatctaagagtatacatagtcgaggctctagagtttatatacttggtttttgttcatttgtctcaattattttagagttgtagaatgag 4350  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  4351 agacgaactttgtcgaaaa 4369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 13613 - 13697
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  13613 ctttgcaaaactttgaaatttaagtgagttggcctatgagacgttgatgtatacactactgcactcatatatgatttgtgtatat 13697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 13841 - 13958
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    ||||||||||||||    || ||| |||||||||| |||||||||| || ||||| |||| |||||| |||||||| || ||||||||||||||||||||    
T  13841 cactcatatgtgatcaaagtgtatacatagtcgaggccctagagtt-atttacttggttttggttcatttgtctcaattattttaaagttgtaaaatgag 13939  T
Q  183 agacggactttatcgaaaa 201  Q
    |||||  |||| |||||||    
T  13940 agacgagctttgtcgaaaa 13958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 1978 - 2071
Alignment:
Q  16 tgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||| |||||||||||||  ||| |||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||||| ||||||    
T  1978 tgatacgaa-ctttgcaaaactttgaaatttaagtgagttggcttatgtgacgttgatgtatacactactgcactcatatgtgatttgagtatat 2071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 1117 - 1235
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatactt-agtttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || ||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||||| ||| |||||||||||||| |||||    
T  1117 cactcatatgtgatctaagtgtatacatagtcgaggccctagagtttatttacttgattttggttcagttgtctcaattattttaaagttgtaatatgag 1216  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  1217 agacgaactttgtcgaaaa 1235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 20793 - 20855
Alignment:
Q  46 agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  20793 agtgagttggcctatgaaacgttgatgtatacactactgcactcatatgtgatttgtgtatat 20855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 21000 - 21074
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagtttggttcaattgtctca 159  Q
    |||| ||||||||| |  || ||| |||||||||| ||||||||||||| ||| | |||||||||| ||||||||    
T  21000 cacttatatgtgatctaagtttatacatagtcgaggccctagagtttatttacatggtttggttcatttgtctca 21074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 11872 - 11754
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttag-tttggttcaattgtctc-attgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  |||||| |||||||||| ||||||||||||  ||||| | ||||||||| ||||||| ||| |||||||||||||||| |||    
T  11872 cactcatatgtgatctaagtatatacatagtcgaggccctagagtttagttacttggttttggttcatttgtctcaattattttaaagttgtaaaacgag 11773  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  11772 agacgaactttgtcgaaaa 11754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 12098 - 12016
Alignment:
Q  26 ctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||||||  ||| |||||||||||| ||||||||| ||||||| |||||||||| |||||  |||||||||||||||||    
T  12098 ctttgcaaaactttgaaatttaagtgagttgacctatgagatgttgatgtatacactactgcactc--atgtgatttgtgtatat 12016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 5000 - 5118
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatactt-agtttggttcaattgtctca-ttgttttaaagttgtaaaatgag 182  Q
    |||||||||||||| |  || |||  ||||||||| ||||||||||||| ||||| | ||||||||| |||||||| || |||||||||| |||||||||    
T  5000 cactcatatgtgatctaagtgtatatatagtcgaggccctagagtttatttacttgattttggttcatttgtctcaattattttaaagttttaaaatgag 5099  T
Q  183 agacggactttatcgaaaa 201  Q
    ||||| ||||| |||||||    
T  5100 agacgaactttgtcgaaaa 5118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 14686 - 14751
Alignment:
Q  43 ttaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    ||||| || ||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  14686 ttaagagaattggcctctgagacattgatgtatacactactgcactcatatgtgatttgtgtatat 14751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 118543 - 118626
Alignment:
Q  120 accctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||||||||||||| ||||| |||| |||||| ||||| || || ||||||||||||||||||||||||| ||||| |||||||    
T  118543 accctagagtttatttacttggttttggttcatttgtcccaattattttaaagttgtaaaatgagagacgaactttgtcgaaaa 118626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 117094 - 117185
Alignment:
Q  17 gatacgaatctttgcaaaacttaaaatta-agtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||| ||||||||||||| | |||  |||||||| |||||||| || |||||| |||||||||| |||||| || ||||||||||||||    
T  117094 gatacgaa-ctttgcaaaacttgagatttgagtgagttagcctatgaaacattgatgtatacactactacactcaaatatgatttgtgtatat 117185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1278 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1278
Description:

Target: scaffold1278; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 691 - 631
Alignment:
Q  142 tttggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    |||| ||||||||||||| |||||| ||||||||||||||| ||||| ||||| |||||||    
T  691 tttgattcaattgtctcaattgtttcaaagttgtaaaatgatagacgaactttgtcgaaaa 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 1887 - 1793
Alignment:
Q  15 atgatacgaatctttgcaaaactt--aaaattaagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||| ||| |||||||||  ||| || ||||| || |||||||| ||||| |||  ||||||||| |||||| |||||||||||||||||    
T  1887 atgatacgaacctt-gcaaaactttgaaatttgagtgaattagcctatgaaacgtttatgtgtacactactgcactcacatgtgatttgtgtatat 1793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 7245 - 7149
Alignment:
Q  85 cactcatatgtgatttgtgtatatgcatagtcgagaccctagagtttatatacttagttt-ggttcaattgtctc-attgttttaaagttgtaaaat 179  Q
    |||||||||||||| |  || ||| |||||| ||| | ||||||||| | ||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  7245 cactcatatgtgatctaagtgtatacatagttgaggcactagagtttgtttacttggttttggttcaattgtctcaattgtttaaaagttgtaaaat 7149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 2494 - 2435
Alignment:
Q  45 aagtgagttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgt 104  Q
    |||||| || ||||||||||| || ||| |||||||||| ||||||||||||| ||||||    
T  2494 aagtgaattagcctatgagacatttatgtatacactactgcactcatatgtgacttgtgt 2435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 8141 - 8208
Alignment:
Q  122 cctagagtttatatacttagttt-ggttcaattgtctca-ttgttttaaagttgtaaaatgagagacg 187  Q
    |||| ||||||| ||||| |||| ||||||||||||||| || ||||||||||||| |||||||||||    
T  8141 cctatagtttatttacttggttttggttcaattgtctcaattattttaaagttgtagaatgagagacg 8208  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 33926 - 33960
Alignment:
Q  74 atacactacttcactcatatgtgatttgtgtatat 108  Q
    |||||||||| ||||||||||||||||||||||||    
T  33926 atacactactacactcatatgtgatttgtgtatat 33960  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 9465 - 9408
Alignment:
Q  52 ttggcctatgagacgttgatgcatacactacttcactcatatgtgatttgtgtatatg 109  Q
    ||||||||||| | ||| ||| ||||||||||||||| |||||||| |||||| ||||    
T  9465 ttggcctatgatatgtttatgtatacactacttcactaatatgtgacttgtgtgtatg 9408  T

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Target: scaffold1957 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1957
Description:

Target: scaffold1957; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 847 - 907
Alignment:
Q  142 tttggttcaattgtctca-ttgttttaaagttgtaaaatgagagacggactttatcgaaaa 201  Q
    ||||||||| |||||||| || ||||||||||||||| ||| ||||| ||||| |||||||    
T  847 tttggttcatttgtctcaattattttaaagttgtaaagtgaaagacgaactttgtcgaaaa 907  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 20757 - 20729
Alignment:
Q  200 aaatgattcttttaagtcaattgtcttat 228  Q
    |||||||||||||||||||||||||||||    
T  20757 aaatgattcttttaagtcaattgtcttat 20729  T

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Target: scaffold0150; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 27586 - 27558
Alignment:
Q  200 aaatgattcttttaagtcaattgtcttat 228  Q
    |||||||||||||||||||||||||||||    
T  27586 aaatgattcttttaagtcaattgtcttat 27558  T

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