View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_39 (Length: 201)
Name: NF8830_high_39
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 35397063 - 35397207
Alignment:
| Q |
10 |
tagattattctcaaagatccaccgactccaatacatacacaattcaaaagaactatcctactccatcataaggattatacttcactctaagctaaatcgc |
109 |
Q |
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| T |
35397063 |
tagactattctcaaagacccaccgactccaatacatacacagttcaaaagaactatcctactccatcataaggattatacttcactctaagctaaatcgc |
35397162 |
T |
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| Q |
110 |
tccaactaaaagctttaatatcaattgttggaaaaaacaatagag |
154 |
Q |
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| T |
35397163 |
tccaactaaaagctttaatatcaattgttggaaaaaacaatagag |
35397207 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 34981090 - 34981134
Alignment:
| Q |
52 |
ttcaaaagaactatcctactccatcataaggattatacttcactc |
96 |
Q |
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||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
34981090 |
ttcaaaagaactatcatactccatcataaaaaatatacttcactc |
34981134 |
T |
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