View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_4 (Length: 503)
Name: NF8830_high_4
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 29122027 - 29122407
Alignment:
| Q |
1 |
tgttatctgttattgaatctgtgcgcttcaaccctgatgcagaagccatgaattaaattgaagatattgtatatatttattgtttctacaaggagatatg |
100 |
Q |
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| T |
29122027 |
tgttatctgttattgaatctgtgcgcttcaaccctgatgcagaagccatgaattaaattgaagatattgtatatatttgttgtttctacaaggagatatg |
29122126 |
T |
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| Q |
101 |
tctcaatttatatccatggctatttatactttgtacattatgtatgaattgggacccatgcaaaggtgcaagagtgggagaaagaacatttgcaatggcc |
200 |
Q |
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| T |
29122127 |
tctcaatttatatgcatggctatttatactttgtacattatgtatgaattgggacccatgcaaaggtgcaagagtgggagaaagaacatttgcaatggcc |
29122226 |
T |
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| Q |
201 |
aatgagtatgagaatttctaagagggaactattggtatcattcttttcttctttgtttcattgtgatgatatatctatgttaatgttcctgtggcccata |
300 |
Q |
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| T |
29122227 |
aatgagtatgaaaatttctaagagggaactattggtatcattcttttcttctttgtttcattgtggtgatatatctatgttaatgttcctgtggcccata |
29122326 |
T |
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| Q |
301 |
tatgggacagaatatgtgaagttgccatcttcaagacatttgcgtctgtgtcttatgtacaaataatattgaatataccta |
381 |
Q |
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| T |
29122327 |
tatgggacagaatatgtgaagttgccatcttcaagacatttgcgtctgtgtcttatgtacaaataatattgaatataccta |
29122407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 29122479 - 29122571
Alignment:
| Q |
401 |
ggaggaacaaaatggatggattggatgataatgggtggataaaacaattcattatcaatccactaaaaattattttaaaaaatttaagaatta |
493 |
Q |
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| T |
29122479 |
ggagtaacaaaatggatggattggatgataatgggtggataaaacaatccattatcgatccactaaaaattgttttaaaaaatttaagaatta |
29122571 |
T |
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