View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_5 (Length: 474)
Name: NF8830_high_5
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 18362185 - 18362634
Alignment:
| Q |
16 |
tttggaacaaggaagaatattcatgttggaccaccatgactatctcatgccatacttgaacagaataaatgcaaatggggtatctgcttatgcatcaagg |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362185 |
tttggaacaaggaagaatattcatgttggaccaccttgactatctcatgccatacttgaacagaataaatgcaaatggggtatctgcttatgcatcaagg |
18362284 |
T |
|
| Q |
116 |
acacttctattcttaagaagtgatggcatgcttaagccactggaaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362285 |
acacttctattcttaagaagtgatggcatgcttaagccactggcaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttc |
18362384 |
T |
|
| Q |
216 |
ttccatcaaagcaagggacacaagcagcactttggcagcttgctaaagctcatgttttagctaatgataatttttaccatatactagtaagccattggtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362385 |
ttccatcaaagcaagggacacaagcagcactttggcagcttgctaaagctcatgttttagctaatgataatttttaccatatactagtaagccattggtg |
18362484 |
T |
|
| Q |
316 |
atactttatgaagtcaaagagattatttccccttttaagtggtttaaataaagtgcacatgtacaactggaatagtttaacaattaaacatgggattgta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362485 |
atactttatgaagtcaaagagattatttccccttttaagtggtttaaataaagtgcacatgtacaactggaatagtttaacaattaaacatgggattgta |
18362584 |
T |
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| Q |
416 |
gatttgatcatgtttatatatgaaatttaattattgaattacagtattat |
465 |
Q |
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| T |
18362585 |
gatttgatcatgtttatatatgaaatttaattattgaattacagtgttat |
18362634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 3018346 - 3018801
Alignment:
| Q |
16 |
tttggaacaaggaagaatattcatgttggaccaccatgactatctcatgccatacttgaacagaataaatgcaaatggggtatctgcttatgcatcaagg |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018346 |
tttggaacaaggaagaatattcatgttggaccaccatgactatctcatgccatacttgaacagaataaatgcaaatggggtatctgcttatgcatcaagg |
3018445 |
T |
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| Q |
116 |
acacttctattcttaagaagtgatggcatgcttaagccactggaaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018446 |
acacttctattcttaagaagtgatggcatgcttaagccactggcaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttc |
3018545 |
T |
|
| Q |
216 |
ttccatcaaagcaagggacacaagcagcactttggcagcttgctaaagctcatgttttagctaatgataatttttaccatatactagtaagccattggtg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3018546 |
ttccatcaaagcaagggacacaagcagcactttggcagcttgctaaagctcatgttttagctaatgatactttttaccatatactagtaagccattggtg |
3018645 |
T |
|
| Q |
316 |
a--ta----ctttatgaagtcaaagagattatttccccttttaagtggtttaaataaagtgcacatgtacaactggaatagtttaacaattaaacatggg |
409 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
3018646 |
agttaaactctttatgaagtcaaagagattatttccccttttaagtggtttaaataaagtgcacatgtacaacgggaatagcttaacaattaaacatggg |
3018745 |
T |
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| Q |
410 |
attgtagatttgatcatgtttatatatgaaatttaattattgaattacagtattat |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3018746 |
attgtagatttgatcatgtttatatatgaaatttaattattgaattacagtgttat |
3018801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 1528298 - 1528339
Alignment:
| Q |
17 |
ttggaacaaggaagaatattcatgttggaccaccatgactat |
58 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||| |
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| T |
1528298 |
ttggaacaagctagaatattcatgttggagcaccatgactat |
1528339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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