View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8830_high_6 (Length: 435)
Name: NF8830_high_6
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_6 |
 | |
|
| [»] scaffold0738 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
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| [»] scaffold0537 (1 HSPs) |
| | |
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| [»] scaffold0752 (1 HSPs) |
| | |
|
| [»] scaffold0544 (1 HSPs) |
| | |
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| [»] scaffold0017 (1 HSPs) |
| | |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0547 (1 HSPs) |
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| [»] scaffold0269 (2 HSPs) |
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| [»] scaffold0207 (1 HSPs) |
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| [»] scaffold0739 (2 HSPs) |
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| [»] scaffold0450 (1 HSPs) |
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| [»] scaffold0297 (1 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 412
Target Start/End: Original strand, 22152999 - 22153407
Alignment:
| Q |
4 |
agatggacatcaacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
103 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22152999 |
agattgacaccaacgaatcctatgtgctcaaggaaagaacgatgattatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
22153098 |
T |
|
| Q |
104 |
cttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |||| |
|
|
| T |
22153099 |
cttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcacgatgatcaacaaaccttcctatgaaaaccaggtc |
22153198 |
T |
|
| Q |
204 |
aaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaa |
303 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||| ||||||||| |||||| || ||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22153199 |
aaggacttctgggtaaagccagaggtgtttgacaaaagaaacgccaaagaagaaaaagtcagggctgtaaaggagaaccctagactcaaagggaaatcaa |
22153298 |
T |
|
| Q |
304 |
gagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22153299 |
gagaagaaatgggtttaagaccattcaatggaacacaaatcagatcaacagtgatgggtatggagattaccatcactgtggaaactattgctaaagcatg |
22153398 |
T |
|
| Q |
404 |
cagatgctc |
412 |
Q |
| |
|
||||||||| |
|
|
| T |
22153399 |
cagatgctc |
22153407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 23787570 - 23787172
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
23787570 |
caactaatcctatgttctcaaagaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgtagattttggttccttagaaagg |
23787471 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||||||||| ||||| ||| |||||||||| ||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||| |
|
|
| T |
23787470 |
aatggaatggatatcaagggttacttttctgctcaacacatgctggattacttcactatgataaacagaccttcctatgaaaatctagtcaaggatttct |
23787371 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||| |
|
|
| T |
23787370 |
gggttagggcagaagtgttcgacagaagaaacgttaaagaagaagaagtcagggctgtaaaggagaatcccaaactcaaagtaaaatcaagaacagaaat |
23787271 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| ||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |||||| || |||| ||||||||||||||| |
|
|
| T |
23787270 |
gggtctaagaccattcaatggaacagagattagatcaacagtgatgggtatggaaattaccatcacagtggaaataatcgctagagcatgcagatgctc |
23787172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 410
Target Start/End: Original strand, 711 - 1117
Alignment:
| Q |
4 |
agatggacatcaacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
103 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
711 |
agatcgacaccaacgaatcctatgtgctcaaggatagaacgatgactatacctctaaacaaactggatgttcaagtagaagccaccgttgattttggttc |
810 |
T |
|
| Q |
104 |
cttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
811 |
cttggaaaggaacggtatggatatcaaaggttattttgttgctcaacatatgttggattacttcacgatgatcaacagaccttcatatgaaaacctggtc |
910 |
T |
|
| Q |
204 |
aaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaa |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
911 |
aaggacttctatgtaaaggcagaggtgttcgacaggaaaaacgctaaagaagaagaagtcagggctgtaaaggagaaccccagactcaaagggaaatcaa |
1010 |
T |
|
| Q |
304 |
gagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |
|
|
| T |
1011 |
gagaagaaatgggtttaagaccattcaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacagtagaaactattgctaaagaatg |
1110 |
T |
|
| Q |
404 |
cagatgc |
410 |
Q |
| |
|
|||||| |
|
|
| T |
1111 |
tagatgc |
1117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 4 - 412
Target Start/End: Complemental strand, 18547493 - 18547085
Alignment:
| Q |
4 |
agatggacatcaacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
103 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18547493 |
agattgacaccaacgaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
18547394 |
T |
|
| Q |
104 |
cttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtc |
203 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18547393 |
cttggaaaggaacataatggatatcaaaggatattttgctgctcaacacatgttggattacttcactatgatcaacagaccgtcctatgaaaacctggtc |
18547294 |
T |
|
| Q |
204 |
aaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaa |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
18547293 |
aaggacttctgggtaaaggcagaggtgttttacagaagaaacactaaagaagaagaagtcagggctgtaaaagagaaccccagactcaaagggaaatcaa |
18547194 |
T |
|
| Q |
304 |
gagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||| || ||||||| |||||| |
|
|
| T |
18547193 |
gagaagaaatgggtttaagaccattcaatggaacaaaaattagatcaacagtgatgggtatggagattcccatcacggtggatacaattgctagagcatg |
18547094 |
T |
|
| Q |
404 |
cagatgctc |
412 |
Q |
| |
|
||||||||| |
|
|
| T |
18547093 |
cagatgctc |
18547085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 4 - 410
Target Start/End: Complemental strand, 17783642 - 17783236
Alignment:
| Q |
4 |
agatggacatcaacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
103 |
Q |
| |
|
|||| |||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17783642 |
agatcgacaccaacgaatcctatgtgcttaaggatagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttc |
17783543 |
T |
|
| Q |
104 |
cttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtc |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||||||| |
|
|
| T |
17783542 |
cttggaaaggaacggtatggacatcaaagagtattttgctgctcaacatatgttggattacttcacgatgattaacagaccttcatatgaaaacctggtc |
17783443 |
T |
|
| Q |
204 |
aaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaa |
303 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
17783442 |
aaggatttctaggtaaaggcagaggtgttcgacagaagagacgctaaagacgaagaagtcagggctgtaaaggagaacctcatacttaaagggaaatcaa |
17783343 |
T |
|
| Q |
304 |
gagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatg |
403 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
17783342 |
gagaagaaatgagtttaagaccattcaatggaacagaaatcagatcaacagtgacggatatggagattaccatcacagtagaaactattgctaaagcatg |
17783243 |
T |
|
| Q |
404 |
cagatgc |
410 |
Q |
| |
|
||||||| |
|
|
| T |
17783242 |
cagatgc |
17783236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 19458091 - 19458487
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||| | || ||||||| ||||||||||||||| ||||| | || ||||||||||| ||||||||| |
|
|
| T |
19458091 |
caacaaatcatatgttctcaaggaaagaacagtgaccgttccactgaacagactggatgttcaagtcgaagctgctgtagattttggttcattggaaagg |
19458190 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||| ||||| |||||||||||||||||| ||||| ||||||||||| ||| | || ||||| || ||||| || || ||||| || ||| |
|
|
| T |
19458191 |
aatggaatggacatcaagggttattttgctgctcaaaatatgatggattacttcggaatgttaaaaagaccctcatatgagaatctagtcaaagatttct |
19458290 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
| || |||||| ||||||||||| | ||||||| | ||| ||||| |||| ||||||||||| || | |||| ||||||||||||| ||||| |
|
|
| T |
19458291 |
cgttaggggcagaagtgttcgacaggaaaaacgctgaggaagaagaaactagggtagtaaaggagaatcctagactc--agggaaatcaagaacggaaat |
19458388 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| |||| | ||||| || | |||||||| || | |||||||||||||||||||||||||| | ||||| || ||||||||||||| |||||| |
|
|
| T |
19458389 |
gggtctaagttcgttcaaaggtatagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaatcgctaaagcatgcaaatgctc |
19458487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 1654551 - 1654493
Alignment:
| Q |
354 |
gtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
1654551 |
gtgatgggtatggagattaccatcactgtagaaacaattgctaaagcatgcagatgctc |
1654493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 55434 - 55840
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55434 |
caacgaatcctatgtgctcaaggaaagaatgatgactatacctctgaacaaactggatgttcaagtagaagccaccgtagattttggttccttggaaagg |
55533 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
55534 |
aacgaaatggatatcaagggatactttgctgctcaacatatgttggattacttcactatgatcaatacaccttcctatgaaaacctggtcaaggacttct |
55633 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |
|
|
| T |
55634 |
gggtaaaggtagaggtgttcgatagaagaaacgctgaagaagaagaagtcagggctgtaaaggaggatcccagactcaaagggaaatcaagagcagaaat |
55733 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctcg |
413 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||| | ||||||||||| |||||||||||| |||||| |
|
|
| T |
55734 |
gggtttaagaccatttaatggaatagaaattagatcaacagtgatgggtatggaaattaccatcatggtggaaactatttctaaagcatgcaaatgctcc |
55833 |
T |
|
| Q |
414 |
attgatg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
55834 |
attgatg |
55840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 20879726 - 20880132
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20879726 |
caacgaatcctatgtactcaaggaaagaacgatgattatacctctgaacaagctgaatgttcaagtagaagtcaccgttgattttggttccttggaaagg |
20879825 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||| | || ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
20879826 |
aacgaaatggatatcaaaggtttctttgttgctcaacatatgcttgactacttcactatgatcaacagaccttcctatgaaaacctggtcaaggacttct |
20879925 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||||||||||||||||||| ||| |||| | || |||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
20879926 |
gggtaaaggcagaggtgttcaacataagagatgcaaaagaagaagaagtcagggttgtaaaggagaaccccagactcaaaggaaaatcaagagaagaaat |
20880025 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctcg |
413 |
Q |
| |
|
| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20880026 |
gagtttaagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacggtggaaactattgctaaagcatgcagatgctcg |
20880125 |
T |
|
| Q |
414 |
attgatg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
20880126 |
attgatg |
20880132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 201 - 412
Target Start/End: Complemental strand, 22646697 - 22646486
Alignment:
| Q |
201 |
gtcaaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaat |
300 |
Q |
| |
|
|||||||| ||| |||| | |||||| ||||||||||| | | ||||| |||| |||||| ||| |||||||| || || | |||||||||||||| |
|
|
| T |
22646697 |
gtcaaggatttctgggttagggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttagtaaaggaaaatcctagactcaaagggaaat |
22646598 |
T |
|
| Q |
301 |
caagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagc |
400 |
Q |
| |
|
| ||| ||||||||| ||| ||| ||||| ||||| |||||||| || | |||||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
22646597 |
cgagaacggaaatgggtctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgctaaagc |
22646498 |
T |
|
| Q |
401 |
atgcagatgctc |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22646497 |
atgcagatgctc |
22646486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 44818939 - 44818967
Alignment:
| Q |
291 |
aaagggaaatcaagagaagaaatgggttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44818939 |
aaagggaaatcaagagaagaaatgggttt |
44818967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 62661 - 62259
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
62661 |
caacgaatcttatgttctcaaggaaagaacggtgactgtacctctgaacaaactggatgttcaagtagaagccaccgtagatcttggttccttggaaagg |
62562 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
62561 |
aactaaatggatatcaaaggttactttgctgctcaacatatgttggattacttcactatgatcaacagaccttcctatgaaaacctagtcaaggacttct |
62462 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgtt----cgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaag |
309 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||| || |
|
|
| T |
62461 |
gggtaaaggcagaggttttcgaccgacagaagaaacgctgaagaagaagaagtcagggctgtaaaggggaatcccagactcaaagggaaatcaagaacag |
62362 |
T |
|
| Q |
310 |
aaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatg |
409 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
62361 |
aaatgggtttaagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacggtggaaacaattgctagagcatgcagatg |
62262 |
T |
|
| Q |
410 |
ctc |
412 |
Q |
| |
|
||| |
|
|
| T |
62261 |
ctc |
62259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 1732 - 2016
Alignment:
| Q |
19 |
aatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaaggaacgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
1732 |
aatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccactgtagattttggttccttggaaaggaacgg |
1831 |
T |
|
| Q |
119 |
tatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttcagggta |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
1832 |
aatggatatcaaaggttactttgctgctcaacatatgttggattacttcactatgatcaacagaccttcctatgaaaacctggtcaaggacttctaggta |
1931 |
T |
|
| Q |
219 |
aaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1932 |
aaggcagaggtgttcgacagaagaaacgttgaagaagaagaagtcaaggctgtaaaggagaaccccagactcaaagggaaatcaa |
2016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 13527366 - 13526958
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
13527366 |
caacgaatcttatgttctcaaagaaagaatggtgactgtacctctgaacaaactggatgttcaagtagaagccaccgtagattttggttctttgaaaagg |
13527267 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| || ||||| || || |
|
|
| T |
13527266 |
aatgggatggatatcaaggattactttgctgctcaacatatgttggattacttcactatgattaacagacattcctatgaaaatctagtcaaagatttat |
13527167 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgct---aaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaaga |
310 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
13527166 |
gggtcagggcagaagtgttcgacagaagaaacgctgaagaagaagaagaagtcagggttgtaaaggagaatccctgactcaaagggaaatcaagaacaga |
13527067 |
T |
|
| Q |
311 |
aatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgc |
410 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| |
|
|
| T |
13527066 |
aatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggagattaccatcacggtggaaacaattgttatagcatgcagatgc |
13526967 |
T |
|
| Q |
411 |
tcgattgat |
419 |
Q |
| |
|
||||||||| |
|
|
| T |
13526966 |
tcgattgat |
13526958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 412
Target Start/End: Complemental strand, 23482175 - 23481856
Alignment:
| Q |
93 |
gattttggttccttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatg |
192 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||| ||| || | | ||| |||| | || |||| || ||| |
|
|
| T |
23482175 |
gattttggttccttggaaaggaatggaatggacatcaagggttactttgctgctcaaagcatgacagaattcatcagtatgttgaatggaccctcgtata |
23482076 |
T |
|
| Q |
193 |
aaaacctggtcaaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaa |
292 |
Q |
| |
|
|| ||||| || |||||| |||| | |||||| ||||| ||||| | | | ||| ||||| ||||| | | | ||| |||||||| || | || || |
|
|
| T |
23482075 |
tgaatctggtaaaagacttctgggttagggcagaagtgtttgacaggaaagatgctgaagaagaagaaattaagcttgtgaaggagaatcctaagcttaa |
23481976 |
T |
|
| Q |
293 |
agggaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactatt |
392 |
Q |
| |
|
||||||||||||| ||||||||||| | || ||||| ||||| |||||||| || | |||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
23481975 |
agggaaatcaagaacggaaatgggtttgaatccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaatt |
23481876 |
T |
|
| Q |
393 |
gctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23481875 |
gctaaagcatgcagatgctc |
23481856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 21672663 - 21672800
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||| |||| ||| ||| | ||||||||||||| ||| || || | || |||||||| ||| ||||| |
|
|
| T |
21672663 |
caacaaatcatatgttcttaaggaaagaactgtgactgtaccactggacagattggatgttcaagtggaatcctccatcgactttggttcgttgaaaagg |
21672762 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaaca |
151 |
Q |
| |
|
|| || ||||||||| || ||||||||| ||||||| |
|
|
| T |
21672763 |
aatggaatggatatcttagcctattttgcttctcaaca |
21672800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 409
Target Start/End: Original strand, 21672922 - 21673058
Alignment:
| Q |
273 |
aaggagaaccccatactcaaagggaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagatta |
372 |
Q |
| |
|
||||||||||| | || ||||| ||||| ||| ||||||||||| | ||| |||||||| |||||||| || || | |||||||| |||||||| | |
|
|
| T |
21672922 |
aaggagaaccctaagcttaaaggaaaatctagaacggaaatgggtttgaaaccgttcaatggtactgaaataaggtctgctgtgatgggaatggagatca |
21673021 |
T |
|
| Q |
373 |
ccatcacgatggaaactattgctaaagcatgcagatg |
409 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||| |
|
|
| T |
21673022 |
ccatcactgcagaaactattgctagagtatgcagatg |
21673058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0752 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 6089 - 5691
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||| |||| || || ||||||||||||||||||||||||||||||| || ||| |||||||||| |||||| |
|
|
| T |
6089 |
caacgaatcatatgttctcaaagaaagaacggtgaccgtatctttgaacaaactggatgttcaagtagaagccactgtagatcttggttccttagaaagg |
5990 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||||||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||| |
|
|
| T |
5989 |
aatggaatggatatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttct |
5890 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | |||| | ||||||||||||||||| ||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5889 |
gggtcagggcaaaagtgttcgacagaagaaatgctgaagagaaagaagttagggctgtaaaggagaatcccatactcaaagggaaatcaagaacagaaat |
5790 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| || |||| |||||||||||||| |
|
|
| T |
5789 |
gggtctaagaccattcaatggaacagaaatcagatcaacaatgatgggtatggaaattaccatcacagtggaaacaatcgctagcgcatgcagatgctc |
5691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 6098 - 6504
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
|||| |||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||||| |
|
|
| T |
6098 |
caacgaatcatatgttctcaaagaaagaacagtgaccgtacctctgaacaaactggatgttcaagtagaagccactgtagatcttggttccttagaaagg |
6197 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||||||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |
|
|
| T |
6198 |
aatggaatggatatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggattttt |
6297 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | || ||| ||||||||||||||||| | | |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
6298 |
gggtcagggtagaagtgttcgacagaagaaatgttgtagaataagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaat |
6397 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctcg |
413 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||| |||||||| ||||||| ||||||||||| ||||||| || |||| |||||||| |||||| |
|
|
| T |
6398 |
gggtctaagaccattcaacggaatagaaatcagatcagcagtgatgtgtatggaaattaccatcacagtggaaacaatcgctagagcatgcaaatgctca |
6497 |
T |
|
| Q |
414 |
attgatg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
6498 |
attgatg |
6504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 19309094 - 19309492
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| | | || |||||||||||||||| | |
|
|
| T |
19309094 |
caacaaatcatacgttctcaaagaaagaacggtgatcgtacctctgaacaaactggatgttcaagtagaagcctctatagactttggttccttggaaaag |
19309193 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| | ||||||||||| || || |||||||||||| | ||| ||||||||||| ||||| || ||||| || |||||||| || ||||||| ||| |
|
|
| T |
19309194 |
aatgaaatggatatcaagggatactttgctgctcaatacatgatggattacttcgaaatgataaacagaccttcttatgaaaatctaatcaaggatttct |
19309293 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
||| | |||||| ||||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
19309294 |
aggtcagggcagaagtgttcgacagaagaaacgctgaagaagaagaagttagggctataaaggagaatcccagactcaaagggaaatcaagaacagaaat |
19309393 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||| ||||||| || |||| |||||| |||||||| |
|
|
| T |
19309394 |
gggtctaagaccattcaatggaacagaaatcagatcagcagtgatgtgtatggaaattaccatcacagtggaaacaatcgctagagcatgtagatgctc |
19309492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 24810820 - 24811218
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| ||||||||| || |||| ||||| | |||||||||| |||||||| | | || || |||||||||||||||||| |
|
|
| T |
24810820 |
caacaaatcatacgttctcaaagaaagaacggtggtcgtaccactgaatagactggatgttaaagtagaatcagcagtagactttggttccttggaaagg |
24810919 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||| | ||| | || ||||| || |||| || || |||||||| ||| |
|
|
| T |
24810920 |
aatggaatggacatcaagggttactttgctgctcaacacatgacggattactttaaaatgttaaacagaccctcgtatgtgaatctagtcaaggatttct |
24811019 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
||| | |||||| ||||||||||| | | | ||| |||| |||||| | | || ||||| || || | ||||||||||||||| ||| ||||| |
|
|
| T |
24811020 |
aggttagggcagaagtgttcgacaggaaagatgctgaagaggaagaagctaagttagtgaaggaaaatcctagactcaaagggaaatcgagaacggaaat |
24811119 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|| | ||| ||| ||||| ||||| |||||||| || | |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
24811120 |
ggttctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatgctc |
24811218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 49958 - 50356
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||| | || ||||||||||| ||||||||||||||||| | || |||||| ||||||||||||| |
|
|
| T |
49958 |
caacaaatcatacgttctcaaagaaagaacagtgaccgttccactgaacaaactagatgttcaagtagaagcttctgtagattttaattccttggaaagg |
50057 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||||||||| || || |||||||||||||| ||| ||||||||||||| ||| | || ||||| || |||||||| || ||||||||||| |
|
|
| T |
50058 |
aatggaatggatatcaagggatactttgctgctcaacacatgatggattacttcacaatgttaaacagaccttcttatgaaaatctagtcaaggactttt |
50157 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | |||||| |||||||||||||||||| || ||||| ||||||| |||| |||||||||||| || | ||||||||||||||||||| |||||| |
|
|
| T |
50158 |
gggttagggcagaagtgttcgacagaagaaacactgaagaagaagaagttagggttgtaaaggagaatcctagactcaaagggaaatcaagaacagaaat |
50257 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| |||||| |||||||||||| ||||| || ||| | ||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
50258 |
gggtctaagacaattcaatggaacagaaataaggtcagcgatgatgggtatggaaattaccatcacagtggaaacaattgctagagcatgcagatgctc |
50356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 894 - 1291
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| ||||||||| |||| | || ||||||||||||||||||||||||||| | | || || |||| ||||||||||| | |
|
|
| T |
894 |
caacaaatcatacgttctcaaagaaagaacggtgaccgttccactgaacaaactggatgttcaagtagaatcttctgtagactttgattccttggaaatg |
993 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || |||||||||||||| || ||||||| |||| | ||| ||||||||||||| ||||| || ||||| || |||||||| || |||||||||||| |
|
|
| T |
994 |
aatggaatggatatcaaaggatactttgctgttcaa-acatgatggattacttcacaatgataaacagaccctcttatgaaaatctagtcaaggacttct |
1092 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
1093 |
aggtaagggctgaagtgttcgacagaagaaacgctgaagaagaagaagttagggttgtaaaggagaatcccagactcaaagggaaatcaagaacagaaat |
1192 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| ||| ||||||||||||||| |||| || ||| ||||||||||||||| || ||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
1193 |
gggtctaaaaccattcaatggaacataaataaggtcagtagtgatgggtatggaaatcaccatcatagtggaaacaattgctagagcatgcagatgctc |
1291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 109042 - 108646
Alignment:
| Q |
16 |
acaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaaggaa |
115 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||| | || ||||||| ||||||||||||||| ||||| | || ||||||||||||||||||||||| |
|
|
| T |
109042 |
acaaatcatatgttctcaaggaaagaacggtgactgttccactgaacagactggatgttcaagtcgaagctgctgtagattttggttccttggaaaggaa |
108943 |
T |
|
| Q |
116 |
cggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttcagg |
215 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||| ||||| ||||||||||| ||| | || |||| || ||||| || || ||||| || ||| || |
|
|
| T |
108942 |
tggaatggacatcaagggttattttgctgctcaaaatatgatggattacttcgtaatgttgaacagactttcatatgagaatctagtcaaagatttctgg |
108843 |
T |
|
| Q |
216 |
gtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaatgg |
315 |
Q |
| |
|
|| | |||||| ||||||||||| | || |||| | ||| |||||| || | ||||||||||| || | ||||||||||||||||||| ||||||| |
|
|
| T |
108842 |
gtgagggcagaagtgttcgacaggaaaatcgctgaggaagaagaagctagcgtagtaaaggagaatcctagactcaaagggaaatcaagaacggaaatgg |
108743 |
T |
|
| Q |
316 |
gtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|| ||||||| ||||| ||||| |||||||| || || |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
108742 |
gtctaagaccgttcaaaggaacagaaatcaggtctactgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatgctc |
108646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 412
Target Start/End: Complemental strand, 13237 - 12885
Alignment:
| Q |
60 |
aacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttgg |
159 |
Q |
| |
|
|||| ||||||||||||||| ||||| || || ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| | ||| ||| |
|
|
| T |
13237 |
aacagactggatgttcaagtcgaagcaactgtagattttggttccttggaaaggaatggcatggacatcaagggttattttgctgctcagaacatgatgg |
13138 |
T |
|
| Q |
160 |
attacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataaga |
259 |
Q |
| |
|
|||||||| | ||| | || ||||| || ||||| || || ||||| || ||| |||||| ||| || ||||||||||| ||||||||| | ||| |||| |
|
|
| T |
13137 |
attacttcgcaatgttaaacagaccttcttatgagaatctagtcaaagatttctgggtaagggctgaagtgttcgacaggagaaacgctgaggaagaaga |
13038 |
T |
|
| Q |
260 |
agtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatg |
359 |
Q |
| |
|
|| |||| |||||||||||| || | ||||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||| || | |||||| |
|
|
| T |
13037 |
agctagggttgtaaaggagaatcctagactcaaagggaaatcaagaacggaaatgggtctaagaccatccaatggaacagaaatcaggtctgctgtgatg |
12938 |
T |
|
| Q |
360 |
ggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||||||||||||||||||| | ||||| || |||||||||||||||||||| |
|
|
| T |
12937 |
ggtatggagattaccatcacagtcgaaacaatcgctaaagcatgcagatgctc |
12885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 13180881 - 13181279
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| | || ||| ||| ||||||||||||||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
13180881 |
caacaaatcatacgttctcaaggaaagaacgatgaccgttccactggacagactggatgttcaagtcgaagcagcagtagattttggttccttggaaagg |
13180980 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||||||||| ||| |||| || || | |||| | || ||||| || ||||| || || ||||| || ||| |
|
|
| T |
13180981 |
aatggaatggacatcaagggttactttgctgctcaacacatgatggactattttaatatgttgaacagaccttcgtatgagaatcttgtcaaagatttct |
13181080 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | |||||| |||||||| || | | ||||| |||| |||| | ||| |||||||| || || | ||||||||||||||||||| ||||| |
|
|
| T |
13181081 |
gggttagggcagaagtgttcgataggaaagacgctgaagaggaagaggctaggttagtaaaggaaaatcctagactcaaagggaaatcaagaacggaaat |
13181180 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| || | |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
13181181 |
gggtttaaaaccattcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaataattgctaaagcatgcagatgctc |
13181279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 161687 - 162085
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| ||||||||| |||| || || ||||||| ||||||||||||||||||||| | || || |||||||||||| ||||| |
|
|
| T |
161687 |
caacaaatcatacgttctcaaagaaagaacggtgaccattccactgaacagactggatgttcaagtagaagctgcagtagactttggttccttgaaaagg |
161786 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||||| ||| | || ||||| || ||||| || || |||||||| ||| |
|
|
| T |
161787 |
aatggaatggacatcaagggttactttgctgctcaacacatgatggattacttcggaatgttgaatagaccttcgtatgagaatctagtcaaggatttct |
161886 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | |||||| ||||||||||| | | ||||| |||| |||||| ||| ||||||| || || | ||||||||||||||||||| ||||| |
|
|
| T |
161887 |
gggttagggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttaataaaggaaaatcctagactcaaagggaaatcaagaacggaaat |
161986 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| ||| ||| | ||| ||||| |||||||| || ||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
161987 |
gggtctaaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagattatcatcacagtagaaacaattgctaaagcttgcagatgctc |
162085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 13143289 - 13142891
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| ||||||||| |||| || || ||||||| ||||||||||||||||||||| | || || |||||||||||| ||||| |
|
|
| T |
13143289 |
caacaaatcatacgttctcaaagaaagaacggtgaccattccactgaacagactggatgttcaagtagaagctgcagtagactttggttccttgaaaagg |
13143190 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||||| ||| | || ||||| || ||||| || || |||||||| ||| |
|
|
| T |
13143189 |
aatggaatggacatcaagggttactttgctgctcaacacatgatggattacttcggaatgttgaatagaccttcgtatgagaatctagtcaaggatttct |
13143090 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
|||| | |||||| ||||||||||| | | ||||| |||| |||||| ||| ||||||| || || | ||||||||||||||||||| ||||| |
|
|
| T |
13143089 |
gggttagggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttaataaaggaaaatcctagactcaaagggaaatcaagaacggaaat |
13142990 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||| ||| ||| | ||| ||||| |||||||| || ||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
13142989 |
gggtctaaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagattatcatcacagtagaaacaattgctaaagcttgcagatgctc |
13142891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 15657276 - 15657390
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||| |||| ||| ||| | ||||||||||||| ||| || || | || |||||||||||| ||||| |
|
|
| T |
15657276 |
caacaaatcatatgttcttaaggaaagaactgtgactgtaccactggacatattggatgttcaagtggaatcctccatagactttggttccttgaaaagg |
15657375 |
T |
|
| Q |
114 |
aacggtatggatatc |
128 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
15657376 |
aatggaatggatatc |
15657390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 405
Target Start/End: Complemental strand, 15837127 - 15837009
Alignment:
| Q |
287 |
actcaaagggaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaa |
386 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | |||||||||||| || || || || || | |||||||||||||| ||||||||||| | ||| |
|
|
| T |
15837127 |
actcaaagggaaatcaaggactgaaatgggtcttaaaccattcaatggtacggagataaggtctgctgtgatgggtatggaaattaccatcactgtagaa |
15837028 |
T |
|
| Q |
387 |
actattgctaaagcatgca |
405 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
15837027 |
acaattgctaaagcatgca |
15837009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 2764 - 3162
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| || || ||||| ||||||||| || |||| ||||| | |||||||||| |||||||| | | || || |||||||||||||||||| |
|
|
| T |
2764 |
caacaaatcatacgttctcaaagaaagaacggtggtcgtaccactgaatagactggatgttaaagtagaatcagcagtagactttggttccttggaaagg |
2863 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaaacctggtcaaggacttca |
213 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||| | ||| | || ||||| || |||| || || |||||||| ||| |
|
|
| T |
2864 |
aatggaatggacatcaagggttactttgctgctcaacacatgacggattactttaaaatgttaaacagaccctcgtatgtgaatctagtcaaggatttct |
2963 |
T |
|
| Q |
214 |
gggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagggaaatcaagagaagaaat |
313 |
Q |
| |
|
||| | |||||| ||||||||||| | | | ||| |||| |||||| | | || ||||| || || | ||||||||||||||| ||| ||||| |
|
|
| T |
2964 |
aggttagggcagaagtgttcgacaggaaagatgctgaagaggaagaagctaagttagtgaaggaaaatcctagactcaaagggaaatcgagaacggaaat |
3063 |
T |
|
| Q |
314 |
gggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|| | ||| ||| ||||| ||||| |||||||| || | |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
3064 |
ggttctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatgctc |
3162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 73721 - 73584
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| ||||| || ||||||||||| |||||| |||| ||| ||| | ||||||||||||| ||| || | | || |||||||| ||| ||||| |
|
|
| T |
73721 |
caacaaatcatatgttcttaaggaaagaactatgactgtaccactggacagattggatgttcaagtggaatcctcaatcgactttggttctttgaaaagg |
73622 |
T |
|
| Q |
114 |
aacggtatggatatcaaaggttattttgctgctcaaca |
151 |
Q |
| |
|
|| || ||||||||| || |||||||||| ||||||| |
|
|
| T |
73621 |
aatggaatggatatcttagcttattttgcttctcaaca |
73584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 412
Target Start/End: Original strand, 6682 - 6998
Alignment:
| Q |
96 |
tttggttccttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaa |
195 |
Q |
| |
|
|||| |||||||||||| || || || |||||||| ||||| |||||| ||||||||||| | ||||||||| ||| | || ||||| || || || |
|
|
| T |
6682 |
tttgattccttggaaagaaatggaattgatatcaagggttactttgctactcaacatatggttgattacttcgaaatgttaaacagaccttcatacataa |
6781 |
T |
|
| Q |
196 |
acctggtcaaggacttcagggtaaaggcagaggtgttcgacagaagaaacgctaaagaataagaagtcagggctgtaaaggagaaccccatactcaaagg |
295 |
Q |
| |
|
| ||||| ||||||||| ||| | |||||| ||||| ||||| | | ||||| |||| ||| || | | |||||||| || || | | ||||||| |
|
|
| T |
6782 |
atctggtaaaggacttctaggttagggcagaagtgtttgacaggaaagacgctgaagaggaagtagctaagctggtaaaggaaaatccaagattcaaagg |
6881 |
T |
|
| Q |
296 |
gaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgct |
395 |
Q |
| |
|
|||||| || ||||||||| | | |||||| | ||||||||||| || || |||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
6882 |
gaaatcgaggactgaaatgggtcttaaaccattaagaggaactgaaattaggtctgaagtgatgggtatggagatcaccatcactgaagaaacaattgct |
6981 |
T |
|
| Q |
396 |
aaagcatgcagatgctc |
412 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6982 |
aaagcatgcagatgctc |
6998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 409
Target Start/End: Complemental strand, 4542 - 4403
Alignment:
| Q |
270 |
gtaaaggagaaccccatactcaaagggaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggaga |
369 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||||| |||||||| || | ||| ||||| || |||||||| ||||| | |||||||| ||||||| |
|
|
| T |
4542 |
gtaaaggagaacccgaagcttaaaggaaaatcaagaatggaaatgggattgaaaccgttcaagggtactgaaataagatctgctgtgatgggaatggaga |
4443 |
T |
|
| Q |
370 |
ttaccatcacgatggaaactattgctaaagcatgcagatg |
409 |
Q |
| |
|
| |||||||| ||||||||||||| || ||||||||| |
|
|
| T |
4442 |
tcaccatcactgcagaaactattgctagagtatgcagatg |
4403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 10829 - 10726
Alignment:
| Q |
309 |
gaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagat |
408 |
Q |
| |
|
||||||||| | ||||| |||| || ||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| || |||| ||||||||||| |
|
|
| T |
10829 |
gaaatgggtctcagaccgttcagaggcactaagatcaggtcagcagtgatgggtatggagatcaccatcactcaggaaacaatagctagagcatgcagat |
10730 |
T |
|
| Q |
409 |
gctc |
412 |
Q |
| |
|
|||| |
|
|
| T |
10729 |
gctc |
10726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 11042 - 10983
Alignment:
| Q |
96 |
tttggttccttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatg |
155 |
Q |
| |
|
||||| |||||||||||||| || | ||||||||||| |||||| |||||||||||||| |
|
|
| T |
11042 |
tttgggtccttggaaaggaatggagtagatatcaaagggtatttttctgctcaacatatg |
10983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 409
Target Start/End: Original strand, 16815717 - 16815856
Alignment:
| Q |
270 |
gtaaaggagaaccccatactcaaagggaaatcaagagaagaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggaga |
369 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||||| |||||||| || | ||| ||||| || |||||||| ||||| | |||||||| ||||||| |
|
|
| T |
16815717 |
gtaaaggagaacccgaagcttaaaggaaaatcaagaatggaaatgggattgaaaccgttcaagggtactgaaataagatctgctgtgatgggaatggaga |
16815816 |
T |
|
| Q |
370 |
ttaccatcacgatggaaactattgctaaagcatgcagatg |
409 |
Q |
| |
|
| |||||||| ||||||||||||| || ||||||||| |
|
|
| T |
16815817 |
tcaccatcactgcagaaactattgctagagtatgcagatg |
16815856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 24248 - 24190
Alignment:
| Q |
354 |
gtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
24248 |
gtgatgggtatggagattatcatcattgtagaaacaattgctaaagcatgcagatgctc |
24190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0739 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0739
Description:
Target: scaffold0739; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 410
Target Start/End: Complemental strand, 5866 - 5765
Alignment:
| Q |
309 |
gaaatgggtttaagaccattcaatggaactgaaatcagatcaacagtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagat |
408 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || || | || ||||| |||||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
5866 |
gaaatgggtttgagaccgttcaatggtactgaaataaggtctgctgtaatgggaatggagatcaccatcaatgcagaaactattgctaaagtatgcagat |
5767 |
T |
|
| Q |
409 |
gc |
410 |
Q |
| |
|
|| |
|
|
| T |
5766 |
gc |
5765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0739; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 6161 - 6051
Alignment:
| Q |
14 |
caacaaatcctatgtgctcaaggaaagaacgatgactatacctctgaacaaactggatgttcaagtagaagccaccgttgattttggttccttggaaagg |
113 |
Q |
| |
|
||||||||| ||||| || ||||||||||| |||||| |||| ||| ||| | ||||||||||||| ||| || | |||| |||||||| || ||||| |
|
|
| T |
6161 |
caacaaatcatatgttcttaaggaaagaactatgactgtaccactggacagattggatgttcaagtggaatcctctattgactttggttctttaaaaagg |
6062 |
T |
|
| Q |
114 |
aacggtatgga |
124 |
Q |
| |
|
|| || ||||| |
|
|
| T |
6061 |
aatgggatgga |
6051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 2767 - 2735
Alignment:
| Q |
287 |
actcaaagggaaatcaagagaagaaatgggttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2767 |
actcaaagggaaatcaagagaagaaatgggttt |
2735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0297 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0297
Description:
Target: scaffold0297; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 20715 - 20571
Alignment:
| Q |
96 |
tttggttccttggaaaggaacggtatggatatcaaaggttattttgctgctcaacatatgttggattacttcactatgatcaagagaccgtcctatgaaa |
195 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||| ||||| ||||||||| |||| ||| | ||||||||| ||| | || ||||| || ||| | |
|
|
| T |
20715 |
tttgattccttggaaaggaatggaatagatatcaagggttactttgctgcttaacagatggttgattacttcgaaatgttgaacagaccatcgtatatga |
20616 |
T |
|
| Q |
196 |
acctggtcaaggacttcagggtaaaggcagaggtgttcgacagaa |
240 |
Q |
| |
|
| ||||| ||||||||| || | | |||||| ||||||||||||| |
|
|
| T |
20615 |
atctggtaaaggacttctggattagggcagaagtgttcgacagaa |
20571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 21573 - 21631
Alignment:
| Q |
354 |
gtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
21573 |
gtgatgggtatggaccttaccatcactgtagaaacaattgctaaagcatgcggatgctc |
21631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 34774 - 34832
Alignment:
| Q |
354 |
gtgatgggtatggagattaccatcacgatggaaactattgctaaagcatgcagatgctc |
412 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
34774 |
gtgatgggtatggaccttaccatcactgtagaaacaattgctaaagcatgcggatgctc |
34832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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