View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_high_9 (Length: 399)
Name: NF8830_high_9
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 40768846 - 40769223
Alignment:
| Q |
14 |
agaccaagataaaattcatagtccgaa-------ccatgcttgaataggtgaacgaattttgcattcaatttcctagtataaaaaa-taataaattgcac |
105 |
Q |
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| T |
40768846 |
agaccaagataaaattcatagtccgaagtccggaccatgcttgaataggtgaacgaattttgcattcaatttcctagtataaaaaaataagaaattgcac |
40768945 |
T |
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| Q |
106 |
annnnnnnaatggcaaattgcattgaaaatatatcaacaaaagaagaatgccacgtttatttattacaaatgtggagccagaaatacaaaaaggtagaag |
205 |
Q |
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| T |
40768946 |
atttttt-aatggcaaattgcattgaaaatatatcaacaaaagaagaatgccacgtttatttattacaaatgtggagccagaaatacaaaa-ggtagaag |
40769043 |
T |
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| Q |
206 |
acattatccttaacaacaaggtgcagtctgatttgctaaggaaacagatacatgaagttgttatttcaggcttggtgaagccatgacaaaaactacaata |
305 |
Q |
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| T |
40769044 |
acattatccttaacaacagggtgcagtctgatttgctaaggaaacagatacatgaagttgttatttcaggcttggtgaagccatgacaaaaactacaata |
40769143 |
T |
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| Q |
306 |
gagtactaatgcataacacaaacattaggcacatcataattctagaacttaagcaaatgttaccattagaggtacttatt |
385 |
Q |
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| T |
40769144 |
gagtactaatgcatgacacaaacattaggcacatcataattctagaacttaagcaaatgttaccattagaggtacttatt |
40769223 |
T |
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