View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_11 (Length: 422)
Name: NF8830_low_11
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 36466562 - 36466169
Alignment:
| Q |
16 |
acatcaattatgaaccacaaactaaaacaagtttacaacactcattaaaagagcaattaactttctatcaaccatcatccttcaattccaatttttaagt |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466562 |
acatcaattacaaaccacaaactaaaacaagtttacaacactcattaaaagagcaattaactttctatcaaccatcatccttcaattccaatttttaagt |
36466463 |
T |
|
| Q |
116 |
ccttttgagagctacagaagacaccacaaccaaacaagctaggaaaaccgacgcaacgaaagaagcaaccacagccaaacttgaaccctgacaaaaatca |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466462 |
ccttttgagagctacagaagacacaacaaccaaacaagctaggaaaaccgacgcaacgaaagaagcaaccacagccaaacttgaaccctgacaaaaatca |
36466363 |
T |
|
| Q |
216 |
gtgaactgctgacaaatggcattccaatttgcatcttgactcccattgtgtgctaagtacacaacagctgcagcagatgaagcagctgcaaccactaagg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466362 |
gtgaactgctgacaaatggcattccaatttgcatcttgactcccattgtgtgctaagtacacaacagctgcagcagatgaagcagctgcaaccactaagg |
36466263 |
T |
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| Q |
316 |
ccattaatacctgcaattaggtagtcaacannnnnnnncttttctagttaagtgttgaatgatcatttgaaataagatataacgatgattgttg |
409 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466262 |
ccattaatacctgcaattaagtagtcaacattttttttcttttctagttaagtgttgaatgatcatttgaaataagatataacgatgattgttg |
36466169 |
T |
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