View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8830_low_12 (Length: 421)
Name: NF8830_low_12
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 5 - 411
Target Start/End: Original strand, 12907773 - 12908179
Alignment:
| Q |
5 |
gcacagatacacaaaatttattgttctcaatttttgctcctttgatatctcttgtacactcaatgagagatttaagtacctgcacaaacatgagtagatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12907773 |
gcacagatacacaaaatttattgttctcaatttttgctcctttgatatctcttgtacactcaatgagagagttaagtacctgcacaaacatgagtagatc |
12907872 |
T |
|
| Q |
105 |
aggatataacatcacaataaagaaagaaaactgaacaatgattcatggtagtatttctcaaatatccacctcattaatcattggcaggaattcagcagca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907873 |
aggatataacatcacaataaagaaagaaaactgaacaatgattcatggtagtatttctcaaatatccacctcattaatcattggcaggaattcagcagca |
12907972 |
T |
|
| Q |
205 |
ggttggaataaattaaccttcttgccctgtaattttaaggatcataagagagacagcaatttattaagatactcgaagggatattcataataggatgaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907973 |
ggttggaataaattaaccttcttgccctgtaattttaaggatcataagagagacagcaatttattaagatactcgaagggatattcataataggatgaga |
12908072 |
T |
|
| Q |
305 |
ggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggttaagtgacacagattgagattgtctaacagggccaatga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12908073 |
ggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggttatgtgacacagattgagattgtctaacagggccaatga |
12908172 |
T |
|
| Q |
405 |
tgtccat |
411 |
Q |
| |
|
||||||| |
|
|
| T |
12908173 |
tgtccat |
12908179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 57 - 411
Target Start/End: Complemental strand, 13312304 - 13311964
Alignment:
| Q |
57 |
tgtacactcaatgagagat--ttaagtacctgcacaaacatgagtagatcaggatataacatcacaataaagaaagaaaactgaacaatgattcatggta |
154 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||| || || |
|
|
| T |
13312304 |
tgtacactcaatgagagagagttaagtacctgcacaaacatgagttgatcaggacataacatcacaataaagaaagaaaattgaaaaatgattaataata |
13312205 |
T |
|
| Q |
155 |
gtatttctcaaatatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaattttaaggatcataagag |
254 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
13312204 |
gtagt--------atccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttc---ccttgtaatt----ggatcataagag |
13312120 |
T |
|
| Q |
255 |
agacagcaatttattaagatactcgaagggatattcataataggatgagaggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgca |
354 |
Q |
| |
|
||| | |||||||||||||| ||||||| |||||||||||| ||| || | ||||| || |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
13312119 |
agatatcaatttattaagattctcgaagagatattcataattggaaga-atgtagacacattgaccacagtacctgcttgtctgcggacttaatgatgca |
13312021 |
T |
|
| Q |
355 |
attagggtggttaagtgacacagattgagattgtctaacagggccaatgatgtccat |
411 |
Q |
| |
|
||||||||||||| |||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
13312020 |
attagggtggttatgtgatatagataaagattgtctaacagggccaatgatgtccat |
13311964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 1566278 - 1566209
Alignment:
| Q |
172 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaatttta |
241 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
1566278 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaacttccttaccctgtaatttta |
1566209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 1566626 - 1566535
Alignment:
| Q |
7 |
acagatacacaaaatttattgttctcaatttttgctcctttgatatctcttgtacactcaatgagagatttaagtacctgcacaaacatgag |
98 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||| ||| ||||| ||||| |||| | ||| | ||||||| ||||||||| |
|
|
| T |
1566626 |
acagacacacaaaacttgttgttctcaatttttgctcctttgatgtcttttgtagactcagtgagcaacttacggacctgcataaacatgag |
1566535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University