View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_13 (Length: 406)
Name: NF8830_low_13
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 37202286 - 37201911
Alignment:
| Q |
19 |
atatcccatcttgtcacttatgcaaacacctcgttaaaagtatttgggagtattgttttgccagtagccgtgccttgtacttttcaacatctcctttctc |
118 |
Q |
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| T |
37202286 |
atattccatcttgtcactaatgcaaacacctcgttaaacgtatttgggagtattgttttgccactagccgtgccttgtacttttcaacatctcctttctc |
37202187 |
T |
|
| Q |
119 |
attatatttggtattaaatacccatttaaatccatttttt-agctccaccggaaagtgtagtcatgccaagtttcatttctctctataa--ctttcaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
37202186 |
attatatttggtattaaatacccatttaaatccatttttttagctccaccggaaagtgtagtcatgccaagtttcatttctctctataaagctttcatct |
37202087 |
T |
|
| Q |
216 |
caacatccatggctctcctccaattgagattcttcaccgcatattcaaagtgcacatgatcttcaaattgagtaaaagtgactaaggtaggtgtgttatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202086 |
caacatccatggctctcctccaattgagattcttcactgcatattcaaagtgcacatgatcttcaaattgagtaaaagtgactaaggtaggtgtgttatt |
37201987 |
T |
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| Q |
316 |
cttcatttgttgtttcaatgtctcttaacatattcttctagccaacctggcttttacttgagtctcacactgatgt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201986 |
cttcatttgttgtttcaatgtctcttaacatattcttctagccaacctggcttttacttgagtctcacactgatgt |
37201911 |
T |
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