View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_17 (Length: 384)
Name: NF8830_low_17
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 45308757 - 45309109
Alignment:
| Q |
19 |
actgatttcattatataatcatcacagatagaaataaaagattgtaacatactaagatatatataatgaaaactaaaacattgctagtctcgtccttttt |
118 |
Q |
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| T |
45308757 |
actgatttcattatataatcatcacagatagaaataatagtttgtaacatactaagatatatataatgaaaactaaaacattgctagtctcgtccttttt |
45308856 |
T |
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| Q |
119 |
cctcatcttgattattaatattacttttggtattgtccacagtgataatttcaatgagtttagaatccctaataaggttgtcaagtccttatgcaaagac |
218 |
Q |
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| T |
45308857 |
cctcatcttgattattaatattacttttggtattgtccacagtgataatttcaatgagtttagaatccctaataaggttgtcaagtccttatgcaaagac |
45308956 |
T |
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| Q |
219 |
actgatgaccataaactttgccatgatgtcctctaccccgtgaaaacctcaaacccaatagattatattgatgttgtggtgaagaacttgatggaaagcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45308957 |
actgatgaccataaactttgccatgatgtcctctaccccgtgaaaacctcaaacccaatagattatattgatgttgtggtgaagaacttgatggaaagcg |
45309056 |
T |
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| Q |
319 |
tagaaaacgcatttaatgacatgagtaataaacttagttctatggagaataat |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45309057 |
tagaaaacgcatttaatgacatgagtaataaacttagttctatggagaataat |
45309109 |
T |
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