View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_2 (Length: 661)
Name: NF8830_low_2
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 7340112 - 7340438
Alignment:
| Q |
1 |
tcttcactaaaattgataattcttggtgaactgtgcctctcttaatctaaattttctgtaacaacaaaaaatactacaacatgaatgtatgccatgtggt |
100 |
Q |
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| T |
7340112 |
tcttcactaaaattgataattcttggtgaactgtgcctctcttaatctaaattttctgtaacaacaaaaaatactacaacatgaatgtatgccatgtggt |
7340211 |
T |
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| Q |
101 |
taatattcaaataattaataaagattattatttgtcaaataataatacatgcttcacnnnnnnnaatacgtttgaaaacattaaaaatcaattgatttag |
200 |
Q |
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| T |
7340212 |
taatattcaaataattaataaagattattatttgtaaaataata---catgcttcactttttttaatacgtgtgaagacattaaaaatcaattgatttag |
7340308 |
T |
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| Q |
201 |
gactgggggaatcaaaagttgaagaacacctagaaaagaatgctaattttttcaacagcagaagtcaacttataaccttaagaaacatatttaatttatc |
300 |
Q |
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| T |
7340309 |
gactgggggaatcaaatgttgaagaacacctagaaaagaatgctaattttttcaacagcagaagtcaacttataaccttaagaaacatatttaatttatc |
7340408 |
T |
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| Q |
301 |
ccaaattaacctgaaaatgcaatttatctt |
330 |
Q |
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| T |
7340409 |
ccaaattcacctgaaaatgcaatttatctt |
7340438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 403 - 646
Target Start/End: Original strand, 7340513 - 7340756
Alignment:
| Q |
403 |
atttcaatatgatagtacaaacattttgtgtctgcatctcacttgcatccaatgttttcataacaccaattttatttttatcctaaacaaattaaaaact |
502 |
Q |
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| T |
7340513 |
atttcaatatgatagtacaaacattttgtgtctgcatcttacttgcatccaatgttttcataacgccaattttatttttatcctaaacaaattaaaaact |
7340612 |
T |
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| Q |
503 |
ataactttaattttgcctataagcaatataattggttaaagcaactaaaggagcagccttttcaacatcaaatccaatgagacaatcatgtgcatcctta |
602 |
Q |
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| T |
7340613 |
ataactttaattttgcctataagcaatataattggttaaagcaactaaaggagcagccttttcaacatcaaatccaatgagacaatcatgcgcatcctta |
7340712 |
T |
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| Q |
603 |
atcaatttgtcagcaaactccttagatttttccaatcccaaaag |
646 |
Q |
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| T |
7340713 |
atcaatttgtcagcaaactccttagatttttccaatcccaaaag |
7340756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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