View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8830_low_20 (Length: 366)
Name: NF8830_low_20
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_20 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0764 (2 HSPs) |
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| [»] scaffold0313 (4 HSPs) |
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| [»] scaffold1531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 189 - 366
Target Start/End: Original strand, 27162226 - 27162403
Alignment:
| Q |
189 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27162226 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttatatcagagggttcaccatcctttggtggggaatcagc |
27162325 |
T |
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| Q |
289 |
catttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162326 |
catttcatcatcagactcttctttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
27162403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 27162064 - 27162108
Alignment:
| Q |
27 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27162064 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
27162108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 189 - 366
Target Start/End: Complemental strand, 20955962 - 20955785
Alignment:
| Q |
189 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20955962 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagaggattcaccatcctttggtggggaatcagc |
20955863 |
T |
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| Q |
289 |
catttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20955862 |
catttcatcatcagactcttctttttcagaagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
20955785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 20956124 - 20956080
Alignment:
| Q |
27 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20956124 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
20956080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 189 - 366
Target Start/End: Original strand, 1976990 - 1977167
Alignment:
| Q |
189 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagc |
288 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1976990 |
gatcttctgcattttgttgcaggatttcctttgcattttcagcaatatcttgaaaaagatttacatcagagggttcaccatcctttggtggggaatcagc |
1977089 |
T |
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| Q |
289 |
catttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1977090 |
catttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagatttctgacttt |
1977167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 189 - 366
Target Start/End: Original strand, 1984356 - 1984533
Alignment:
| Q |
189 |
gatcttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagc |
288 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1984356 |
gatcttctgcattttgttgcaggatttcctttgcattttcagcaatatcttgaaaaagatttacatcagagggttcaccatcctttggtggggaatcagc |
1984455 |
T |
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| Q |
289 |
catttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1984456 |
catttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagatttctgacttt |
1984533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 1984189 - 1984235
Alignment:
| Q |
25 |
atcagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
71 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1984189 |
atcagttgagtcaacattctgaagttcctcttcagaaattgcagcaa |
1984235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 1976825 - 1976869
Alignment:
| Q |
27 |
cagttgagtcaacattctgaagttcctcttcagagattgcagcaa |
71 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1976825 |
cagttgagtcaacattctgaagttcctcttcagaaattgcagcaa |
1976869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 3108 - 3282
Alignment:
| Q |
192 |
cttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccat |
291 |
Q |
| |
|
||||||||| || ||||||||||| |||||| |||||||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||| || |
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| T |
3108 |
cttctgcatcttcttgaaggatttcttttgcacgttcagcaatatcttggaagagattaacagcagtgggttcatcctcctttggtggggaatcagctat |
3207 |
T |
|
| Q |
292 |
ttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
| |
|
|| |||||||| | || || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
3208 |
ctcttcatcagatgcctctttgtcaggagagttttcttcttcttgtctctgaatgcttgaaagatttctgacttt |
3282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 2936 - 2986
Alignment:
| Q |
14 |
acatcagtaacatcagttgagtcaacattctgaagttcctcttcagagatt |
64 |
Q |
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||||||| |||| ||||||||||||| |||||||| |||| |||||||||| |
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| T |
2936 |
acatcagcaacaccagttgagtcaactttctgaaggtccttttcagagatt |
2986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 366
Target Start/End: Complemental strand, 3507 - 3333
Alignment:
| Q |
192 |
cttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccat |
291 |
Q |
| |
|
||||||||| || ||||||||||| |||||| |||||||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||| || |
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| T |
3507 |
cttctgcatcttcttgaaggatttcttttgcacgttcagcaatatcttggaagagattaacagcagtgggttcatcctcctttggtggggaatcagctat |
3408 |
T |
|
| Q |
292 |
ttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
| |
|
|| |||||||| | || || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
3407 |
ctcttcatcagatgcctctttgtcaggagagttttcttcttcttgtctctgaatgcttgaaagatttctgacttt |
3333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 366
Target Start/End: Complemental strand, 17664 - 17490
Alignment:
| Q |
192 |
cttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccat |
291 |
Q |
| |
|
||||||||| || ||||||||||| |||||| |||||||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||| || |
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| T |
17664 |
cttctgcatcttcttgaaggatttcttttgcacgttcagcaatatcttggaagagattaacagcagtgggttcatcctcctttggtggggaatcagctat |
17565 |
T |
|
| Q |
292 |
ttcatcatcagactcttccttttcaggagagttttcttcctcttgtctttgaatgcttgaaagattcctgacttt |
366 |
Q |
| |
|
|| |||||||| | || || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
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|
| T |
17564 |
ctcttcatcagatgcctctttgtcaggagagttttcttcttcttgtctctgaatgcttgaaagatttctgacttt |
17490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 3679 - 3629
Alignment:
| Q |
14 |
acatcagtaacatcagttgagtcaacattctgaagttcctcttcagagatt |
64 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||| |||| |||||||||| |
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| T |
3679 |
acatcagcaacaccagttgagtcaactttctgaaggtccttttcagagatt |
3629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 17836 - 17786
Alignment:
| Q |
14 |
acatcagtaacatcagttgagtcaacattctgaagttcctcttcagagatt |
64 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
17836 |
acatcagcaacaccagttgagtcaactttctgaaggtccttttcagagatt |
17786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1531 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1531
Description:
Target: scaffold1531; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 324
Target Start/End: Complemental strand, 1272 - 1140
Alignment:
| Q |
192 |
cttctgcattttgctgaaggatttcctttgcattttcagcaatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccat |
291 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| ||| ||| |||||||||||||||| |||| || |||||||| |
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|
| T |
1272 |
cttctgcattttgttgaaggatttctcttgcacgttcagcaattccttggaagagattaacagcagtgggttcaccatcctttagtggagagtcagccat |
1173 |
T |
|
| Q |
292 |
ttcatcatcagactcttccttttcaggagagtt |
324 |
Q |
| |
|
||||||| ||| |||| |||| |||||||| |
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|
| T |
1172 |
ctcatcattagatgcttctttttagggagagtt |
1140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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