View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_23 (Length: 326)
Name: NF8830_low_23
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 14881058 - 14880763
Alignment:
| Q |
14 |
atcaaatccagcaatatattgttagattccaatatggatgcacacttgggagattttggattggcgaaagcaatcgttgagaatcttgattctaataccg |
113 |
Q |
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| T |
14881058 |
atcaaatccagcaatatattgttagattccaatatggatgcacacttgggagattttggattggcgaaagcaatcgttgagaatcttgattctaataccg |
14880959 |
T |
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| Q |
114 |
agtctacttcttgtttcgcaggatcttatggttacatagctccaggtaatgatcatatataccattgatttaaattgttttggttcttctaattttatca |
213 |
Q |
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| T |
14880958 |
agtctacttcttgtttcgcaggatcttatggttacattgctccaggtaatgatcatatataccattgatttaaattgttttggttcttctaattttatca |
14880859 |
T |
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| Q |
214 |
acatcttaaaaactgagctggacaacgaactggcaagacctacaggtcatggttcaattgctttaaaccacttgaactgggacaaaactgcaatcg |
309 |
Q |
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| T |
14880858 |
acatcttaaatactgagctggacaactaactggcaagacctacaggtcatggttcaattgctttaaaccacttgaactgggacaaaactgcaatcg |
14880763 |
T |
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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 39006757 - 39006914
Alignment:
| Q |
11 |
gacatcaaatccagcaatatattgttagattccaatatggatgcacacttgggagattttggattggcgaaagcaatcgttgagaatcttgattctaata |
110 |
Q |
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| T |
39006757 |
gacatcaaatccagcaacatattgctagattccaaaatggaggcacacttgggagattttggactggcaaaagcactcattgaaagttatgactcaaata |
39006856 |
T |
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| Q |
111 |
ccgagtctacttcttgtttcgcaggatcttatggttacatagctccaggtaatgatca |
168 |
Q |
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| T |
39006857 |
ctgagtcaaattcttgttttgcagggtcttatggctacatggctccaggtattgatca |
39006914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 9661220 - 9661181
Alignment:
| Q |
260 |
tcatggttcaattgctttaaaccacttgaactgggacaaa |
299 |
Q |
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| T |
9661220 |
tcatggttcaattgctttaaacggcttgaactgggacaaa |
9661181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 27839344 - 27839297
Alignment:
| Q |
234 |
gacaacgaactggcaagacctacaggtcatggttcaattgctttaaac |
281 |
Q |
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| T |
27839344 |
gacaacgaactggcaagaactctgggtcatggttcaattgctttaaac |
27839297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 28222596 - 28222675
Alignment:
| Q |
221 |
aaaaactgagctggacaacgaactggcaagacctacaggtcatggttcaattgctttaaaccacttgaactgggacaaaac |
301 |
Q |
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| T |
28222596 |
aaaaaccgaactggacatcgaaccagcaaggcctcc-ggtcatggttcaattgatttaaactgcttgaaccgggacaaaac |
28222675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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