View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8830_low_26 (Length: 315)

Name: NF8830_low_26
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8830_low_26
NF8830_low_26
[»] chr1 (1 HSPs)
chr1 (21-311)||(26106734-26107026)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 26106734 - 26107026
Alignment:
Q  21 tatttattttcaatcgaaatatcatattaattaagact--ttcttttgaggaattggagggttaaaaccatagtatgattatatgaaatgaaatggcaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26106734 tatttattttcaatcgaaatatcatattaattaagactctttcttttgaggaattggagggttaaaaccatagtatgattatatgaaatgaaatggcaaa 26106833  T
Q  119 agttgaaaagaatgtttcatgtcatcaaacagattttgataaagaaattacaaagtactttgtgaacaatattgcacaagaaatcacaaagtaatagctt 218  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26106834 agttgaaaagaatgtttcatgtcatctgacagattttgataaagaaattacaaagtactttgtgaacaatattgcacaagaaatcacaaagtaatagctt 26106933  T
Q  219 acaatacacagatgccagcaaatagtagatacaatgtcaattacaatttcttttttggactaagtttacaattttaatgttttcatctcactc 311  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  26106934 acaatacacagatgccagcaaataatagatacaatgtcaattacaatttcttttttggactaagtttacaattttaatgttgtcatcacactc 26107026  T

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