View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_29 (Length: 298)
Name: NF8830_low_29
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 47635102 - 47634824
Alignment:
| Q |
2 |
ctagcttcctttgttgcgtatttcttagcaccaacagaagaatttgcagcattatctgctgttttgttcattgtatcaaacaacaaaggcatgaatgtct |
101 |
Q |
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| T |
47635102 |
ctagcttcctttgttgcgtatttcttagcaccaacagaagaatttgcagcattatctgctgttttgttcattgtatcaaacaacaaaggcatgaatgtct |
47635003 |
T |
|
| Q |
102 |
cctggtttgtgatatttaggctgttcatcatgaaaacgccaggccttgtagccacggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635002 |
cctggtttgtgatatttaggctgttcatcatgaaaacgccaggccttgtagccatggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtc |
47634903 |
T |
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| Q |
202 |
gtaccagattacagctcgtttggataaggaacagtctgcatgtgatgatagtctctgtgttgcgttcgccacacattgt |
280 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47634902 |
gtaccagattacagcttgtttggataaggagcagtctgcatctgatgatagtctctgtgttgcgttcgccacacattgt |
47634824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 20128155 - 20128262
Alignment:
| Q |
121 |
gctgttcatcatgaaaacgccaggccttgtagccacggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagctcgt |
220 |
Q |
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||||||||| || ||||| ||||| | ||||| || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||| |
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| T |
20128155 |
gctgttcattataaaaacaccaggacgtgtagaaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgt |
20128254 |
T |
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| Q |
221 |
ttggataa |
228 |
Q |
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|||||||| |
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| T |
20128255 |
ttggataa |
20128262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 22204715 - 22204608
Alignment:
| Q |
121 |
gctgttcatcatgaaaacgccaggccttgtagccacggtggagaaaaaagaggtgttggaatatcgaaccatgcactcgtcgtaccagattacagctcgt |
220 |
Q |
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||||||||| || ||||| ||||| | ||||| || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||| |
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| T |
22204715 |
gctgttcattataaaaacaccaggacgtgtagaaacagtggaaaagaaagaggtgttggagtatcgaaccatgcactcctcgtaccaaatgacagctcgt |
22204616 |
T |
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| Q |
221 |
ttggataa |
228 |
Q |
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|||||||| |
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| T |
22204615 |
ttggataa |
22204608 |
T |
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