View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_3 (Length: 604)
Name: NF8830_low_3
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 42 - 406
Target Start/End: Complemental strand, 2566783 - 2566425
Alignment:
| Q |
42 |
atttaaagattttttcaacttctacttttctattagacgtagaaatggaaggaataattgactggtaagttaatgtagtgtaattaaaatataaataaaa |
141 |
Q |
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| T |
2566783 |
atttaaagattctttcaacttctacttttctattcgatgtagaaatggaacgaataattgataggtaagttaatgtagtgtaattaaaatataaataaaa |
2566684 |
T |
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| Q |
142 |
tatgcatttattaattatttgaggtgagaaaaggataacgtaaatataacaaattatttgtttgtacaagtgatggatggctttttggtgagcaggaggg |
241 |
Q |
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| T |
2566683 |
tatgcatatgttaattatttgaggtgagaaaaggataacgtaaatatgacaaattatttgtttgtacaagtgatggatggctttttggtgagcaggaggg |
2566584 |
T |
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| Q |
242 |
acacgtcaggttttactcatttctatccaaaacccctccctcacacctcacacctcacacctgagaattttttcttcttaat---tactagtactaaact |
338 |
Q |
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| T |
2566583 |
acacgtcaggttttactcatttctatccaaaacccctccctcacacct---------cacctgagaattttttcttcttaattactactagtactaaact |
2566493 |
T |
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| Q |
339 |
tttgtggctcttcnnnnnnnnnnnnctataataatcgttcaccattacttttccctccatcgacatac |
406 |
Q |
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| T |
2566492 |
tttgtggctcttcttttttctttttctataataatccttcaccattacttttccctccatcgacatac |
2566425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 444 - 593
Target Start/End: Complemental strand, 2566390 - 2566241
Alignment:
| Q |
444 |
gtctctgaaaaccaacgctggtagcgtgctgttgtttctggaatcttcttcttccttctgtaaatgcactttgcaccttattcgctattgctatgacttt |
543 |
Q |
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| T |
2566390 |
gtctctgaaaaccaacgctggtagcgtgctgttgtttctggaatcttcttcttccttctgtaaatgcactttgcaccttattcgctattgctatgacttt |
2566291 |
T |
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| Q |
544 |
ctctgcatcttcgcttcgtcctacctcttctccttcctattcacaggttc |
593 |
Q |
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| T |
2566290 |
ctctgcatcttcgcttcgtcctacctcttctccttcctattcacaggttc |
2566241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 11647624 - 11647513
Alignment:
| Q |
106 |
gtaagttaatgtagtgtaattaaaatataaataaaatatgcatttattaattatttgaggtgagaaaaggataacgtaaatataacaaattatttgtttg |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||| ||||| ||||||||| ||||| |||||||||| |
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| T |
11647624 |
gtaaattaatgtagtgtaattaaaatataaataaaatatgcatttgttagttatttgagatgacaaagggataccgtaaatatgacaaactatttgtttg |
11647525 |
T |
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| Q |
206 |
tacaagtgatgg |
217 |
Q |
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| T |
11647524 |
tacaagtgatgg |
11647513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 12268848 - 12268886
Alignment:
| Q |
3 |
ttatggtagttagtcaagtaacacaatgcgttgagatga |
41 |
Q |
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| T |
12268848 |
ttatggtagttagtcaagtaaaacaatgcgttgtgatga |
12268886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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