View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_32 (Length: 285)
Name: NF8830_low_32
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_32 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 30049529 - 30049260
Alignment:
| Q |
16 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049529 |
tcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
30049430 |
T |
|
| Q |
116 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049429 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
30049330 |
T |
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| Q |
216 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtac |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30049329 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtac |
30049260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 7162482 - 7162214
Alignment:
| Q |
16 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
115 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |
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| T |
7162482 |
tcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactagcaagtgccttttttaaaatgtctgccaat |
7162383 |
T |
|
| Q |
116 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7162382 |
tgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattgatatgctttgctcttccatgtt |
7162283 |
T |
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| Q |
216 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgta |
284 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7162282 |
gaattggatttttggcagttgctatagctgatttgttgtcacaccatagcacaattggttcctcttgta |
7162214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 196486 - 196755
Alignment:
| Q |
16 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
196486 |
tcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
196585 |
T |
|
| Q |
116 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
196586 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
196685 |
T |
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| Q |
216 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtac |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
196686 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtac |
196755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 3945783 - 3945514
Alignment:
| Q |
16 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945783 |
tcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
3945684 |
T |
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| Q |
116 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945683 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
3945584 |
T |
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| Q |
216 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtac |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3945583 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtac |
3945514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 39949647 - 39949916
Alignment:
| Q |
16 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
115 |
Q |
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|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39949647 |
tcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
39949746 |
T |
|
| Q |
116 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39949747 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaattttacattgatatgctttgttcttccatgtt |
39949846 |
T |
|
| Q |
216 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtac |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39949847 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtac |
39949916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 22365411 - 22365142
Alignment:
| Q |
16 |
tcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
115 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365411 |
tcaacactcctccttaaaacttatctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaat |
22365312 |
T |
|
| Q |
116 |
tgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365311 |
tgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgtt |
22365212 |
T |
|
| Q |
216 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattgattcctcttgtac |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
22365211 |
gaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtac |
22365142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
164 |
gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
228 |
Q |
| |
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||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
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|
| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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