View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_37 (Length: 271)
Name: NF8830_low_37
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 7141453 - 7141217
Alignment:
| Q |
17 |
cttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagc |
116 |
Q |
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| T |
7141453 |
cttgtcttaattcagcttgtgccttctccctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagc |
7141354 |
T |
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| Q |
117 |
aacaaatacatcctgaaattatagaagaacatgtatagaattcaataatattggactagcaattgcaccttaaaaccataggctaaaatatttgtgcaga |
216 |
Q |
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| T |
7141353 |
aacaaatacatcctgaaattatagaagaacatgtatagaattcaataatattggactagcaattgcaccttaaaaccataggctaaaatatttgtgcaga |
7141254 |
T |
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| Q |
217 |
atttaatggaaaaacaaaggaaataggaaattagggt |
253 |
Q |
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| T |
7141253 |
atttaatggaaaaacaaaggaaataggaaattagggt |
7141217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 7154219 - 7154105
Alignment:
| Q |
21 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaaca |
120 |
Q |
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| T |
7154219 |
tcttagttcagcttgtgctttttctctcacacttggatttttcatcatttctgacatagcccactctattgttgtcgatgttgtatcagttccggcaaca |
7154120 |
T |
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| Q |
121 |
aatacatcctgaaat |
135 |
Q |
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| T |
7154119 |
aatacgtcctgaaat |
7154105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 7131725 - 7131652
Alignment:
| Q |
21 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttg |
94 |
Q |
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| T |
7131725 |
tcttatttcagcttgtgccttgttcatcacacttgggtttttcatcagttctgacatggcccatactattgttg |
7131652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 12425532 - 12425604
Alignment:
| Q |
21 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
93 |
Q |
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| T |
12425532 |
tcttatttcagcttgtgccttcttcatcactcttgggtttttcattaactctgacatagcccactctattgtt |
12425604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 12268153 - 12268081
Alignment:
| Q |
21 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
93 |
Q |
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| T |
12268153 |
tcttatttcagcttgtgctttcatcctcactctagggtttttcattaactctgacatagcccaatctattgtt |
12268081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 12438646 - 12438728
Alignment:
| Q |
49 |
actcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctg |
131 |
Q |
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|||||||||||||||| ||||||||| | |||||||||| ||||| | |||||| || ||||||||| ||||| |||||| |
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| T |
12438646 |
actcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg |
12438728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 55958761 - 55958833
Alignment:
| Q |
21 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
93 |
Q |
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||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||| ||||||||| |
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| T |
55958761 |
tcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt |
55958833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 55955217 - 55955274
Alignment:
| Q |
33 |
ttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctatt |
90 |
Q |
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| T |
55955217 |
ttgtgctttcttcatcactcttgagtttttcatcaactctgacatagcccactctatt |
55955274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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