View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_38 (Length: 266)
Name: NF8830_low_38
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_38 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 145625 - 145369
Alignment:
| Q |
1 |
caccatccttgcacaaatcacgcaagaagtgaaatctaacatctatatgtttgctcctcccgtgtagaacagaattttttgacagcttaatggtagagac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
145625 |
caccatccttgcacaaatcatgcaagaagtgaaatctaacatctatatgtttgctcctcccgtgtagaacataattttttgacagcttaatggtagagac |
145526 |
T |
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| Q |
101 |
attatcacaaaatactggtgtgggatcttcttcatcatatccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145525 |
attatcacaaaatactggtgtgggatcttcttcatcatatccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgca |
145426 |
T |
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| Q |
201 |
ataaactcagcttcagtagtagacaaagtaactattggttgttttttggatgtccat |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
145425 |
ataaactcagcttcagtagtagacaaagtaactattggttgttttttggatgaccat |
145369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 153646 - 153390
Alignment:
| Q |
1 |
caccatccttgcacaaatcacgcaagaagtgaaatctaacatctatatgtttgctcctcccgtgtagaacagaattttttgacagcttaatggtagagac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
153646 |
caccatccttgcacaaatcatgcaagaagtgaaatctaacatctatatgtttgctcctcccgtgtagaacataattttttgacagcttaatggtagagac |
153547 |
T |
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| Q |
101 |
attatcacaaaatactggtgtgggatcttcttcatcatatccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgca |
200 |
Q |
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| T |
153546 |
attatcacaaaatactggtgtgggatcttcttcatcatatccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgca |
153447 |
T |
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| Q |
201 |
ataaactcagcttcagtagtagacaaagtaactattggttgttttttggatgtccat |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
153446 |
ataaactcagcttcagtagtagacaaagtaactattggttgttttttggatgaccat |
153390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28006419 - 28006222
Alignment:
| Q |
1 |
caccatccttgcacaaatcacgcaagaagtgaaatctaacatctatatgtttgctcctcccgtgtagaacagaattttttgacagcttaatggtagagac |
100 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||| |||||| | |||| | |
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| T |
28006419 |
caccatccttgcacagatcacgcacgaagtgaaatctaacatctatatgtttgctcctcccctgtaaaacataattctttgacaacttaattgcagaggc |
28006320 |
T |
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| Q |
101 |
attatcacaaaatactggtgtgggatcttcttcatcatatccaagctctctaattagccttctcaaccaaatggcttggcaagcacatgatgtagctgca |
200 |
Q |
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|||||| ||||| ||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
28006319 |
attatcgcaaaacactggtgtggg---ctctttatcataaccaagctctctaattaaccttctcaaccaaatgacttagcaagtacatgatgtagctgca |
28006223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 58544 - 58617
Alignment:
| Q |
159 |
cttctcaaccaaatggcttggcaagcacatgatgtagctgcaataaactcagcttcagtagtagacaaagtaac |
232 |
Q |
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||||||| ||| || ||||| || |||||||||| ||||| | ||||||||||||||||||||| || ||||| |
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| T |
58544 |
cttctcagccatatagcttgacaggcacatgatgaagctgttacaaactcagcttcagtagtagataaggtaac |
58617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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