View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8830_low_39 (Length: 264)
Name: NF8830_low_39
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6364872 - 6365120
Alignment:
| Q |
1 |
aaaaagctcctggagttcccatgtcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacactttt |
100 |
Q |
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| T |
6364872 |
aaaaagctcctggagttcccatgtcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttgc |
6364971 |
T |
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| Q |
101 |
cagatacgttttctctccgactttgcctttaccggtttttcctatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgt |
200 |
Q |
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| T |
6364972 |
cagatacgttttctctcccactttgccttttccggtttttcctatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgt |
6365071 |
T |
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| Q |
201 |
tatagctattccaaaatttgatgttttttacagctcaaatgttctttat |
249 |
Q |
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| T |
6365072 |
tatagctattccaaaatttgatgttttttacagctcaaatgttctttat |
6365120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6354114 - 6354203
Alignment:
| Q |
1 |
aaaaagctcctggagttcccatgtcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
90 |
Q |
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| T |
6354114 |
aaaaagctccgggaattcccatgttactgtcccattcaaaatgaatactgaaagcattttgtttgtctcccaatgttggtatggaggtaa |
6354203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 6425664 - 6425754
Alignment:
| Q |
6 |
gctcctggagttcccatgtcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacac |
96 |
Q |
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| T |
6425664 |
gctcctggaattcccatgtcactgccccattcaaaatgaacactgtaagcattttgcttgtctcctaatgttggtatggaggtaataacac |
6425754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 6265663 - 6265711
Alignment:
| Q |
34 |
attcaaattcaatactgaaagcattttgtttatctcccaatgttggcaa |
82 |
Q |
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| T |
6265663 |
attcaaattcaatgctgaaagctgtttgtttatctcccaatgttggcaa |
6265711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 6392592 - 6392665
Alignment:
| Q |
3 |
aaagctcctggagttcccatgtcattg---tcccattcaaattcaatactgaaagcattttgtttatctcccaa |
73 |
Q |
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| T |
6392592 |
aaagctcctggaattcccatgtgattgggatcccattcaaaatgaatactgaaagcattttgtatgtctcccaa |
6392665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 6411732 - 6411805
Alignment:
| Q |
3 |
aaagctcctggagttcccatgtcattg---tcccattcaaattcaatactgaaagcattttgtttatctcccaa |
73 |
Q |
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|||||||||||| ||||||||| |||| ||||||||||| | ||||||||||||||||||| | |||||||| |
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| T |
6411732 |
aaagctcctggaattcccatgtgattgggatcccattcaaaatgaatactgaaagcattttgtatgtctcccaa |
6411805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 7461124 - 7461213
Alignment:
| Q |
1 |
aaaaagctcctggagttcccatgtcattgtcccattcaaattcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
90 |
Q |
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| T |
7461124 |
aaaaagctcctggaattcccatggtactgtcccattgaaaatgaatactgaaagcagattgcttgtcccccaatgttgggagggaggtaa |
7461213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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