View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8830_low_40 (Length: 262)
Name: NF8830_low_40
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8830_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19232421 - 19232176
Alignment:
| Q |
1 |
tctctgacatacccagcttcacccaccaatccaaccaccatcaacttctccgataaagttccggtgacgcagtagaagacactttgatttggacaaagat |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
19232421 |
tctctaacattcccagcttcacccaccaatccaaccaccatcaacttctccgatgaagttccggtgacgcagtagaatacactttgatcaggacaaagat |
19232322 |
T |
|
| Q |
101 |
agtaaggtccttcccatttcattgcaatagtattaaaagagtatgtcacaccggaatctttctccgttacaagcatagtttctccgacgactgaaaccga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
19232321 |
agtaaggtccttcccatttcattgcaatagcattgaaagagtatgtcacaccggaatctttctccgtcacaagcatagtttctccgacgacagaaaccga |
19232222 |
T |
|
| Q |
201 |
ttgccacgtggatgccggcgtattcttcatcttctccggcattgat |
246 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
19232221 |
ctgccacgtggatgccgacgtattcttcatctttttcggcattgat |
19232176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 14629592 - 14629794
Alignment:
| Q |
18 |
ttcacccaccaatccaaccaccatcaacttctccgataaagttccggtgacgcagtagaagacactttgatt---tggacaaagatagtaaggtccttcc |
114 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||| || ||||||||||||||| ||||| ||||||| || ||||| ||||| ||||| |||||| |
|
|
| T |
14629592 |
ttcacccaccaatccggccaccgtcaatttctctgacaaagttccggtgacggtgtagagtacacttttatcatctggacgtagataataaggcccttcc |
14629691 |
T |
|
| Q |
115 |
catttcattgcaatagtattaaaagagtatgtcacaccggaatctttctccgttacaagcatagtttctccgacgactgaaaccgattgccacgtggatg |
214 |
Q |
| |
|
|| | ||| | | | ||||| || | ||| ||||||||||||| |||||||| || ||||| ||||||||||| || | ||||||| |||||| ||||| |
|
|
| T |
14629692 |
caatccatcgtagttgtattgaacgtgtacgtcacaccggaattcttctccgtcacgagcatggtttctccgacaaccgcaaccgatagccacgaggatg |
14629791 |
T |
|
| Q |
215 |
ccg |
217 |
Q |
| |
|
||| |
|
|
| T |
14629792 |
ccg |
14629794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University