View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8830_low_5 (Length: 563)

Name: NF8830_low_5
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8830_low_5
NF8830_low_5
[»] chr1 (7 HSPs)
chr1 (1-210)||(23937632-23937844)
chr1 (327-553)||(23937387-23937610)
chr1 (1-173)||(23931955-23932121)
chr1 (215-268)||(38546962-38547015)
chr1 (215-268)||(10925880-10925933)
chr1 (215-265)||(5533446-5533496)
chr1 (234-268)||(33170904-33170938)
[»] chr7 (6 HSPs)
chr7 (215-268)||(23859196-23859249)
chr7 (211-268)||(7398573-7398630)
chr7 (215-262)||(9014111-9014158)
chr7 (215-268)||(23744919-23744972)
chr7 (215-268)||(12419421-12419474)
chr7 (215-264)||(26917661-26917710)
[»] chr2 (6 HSPs)
chr2 (215-268)||(16097130-16097183)
chr2 (215-268)||(21665628-21665681)
chr2 (215-268)||(22727384-22727437)
chr2 (215-268)||(11952516-11952569)
chr2 (215-264)||(12694801-12694850)
chr2 (215-268)||(37182766-37182819)
[»] chr4 (10 HSPs)
chr4 (213-268)||(51691846-51691901)
chr4 (215-268)||(5893140-5893193)
chr4 (215-268)||(39329318-39329371)
chr4 (215-268)||(11906828-11906881)
chr4 (215-268)||(39655179-39655232)
chr4 (215-264)||(4167852-4167901)
chr4 (215-264)||(24614082-24614131)
chr4 (215-268)||(27112157-27112210)
chr4 (215-268)||(36118385-36118438)
chr4 (215-268)||(37744829-37744882)
[»] chr8 (5 HSPs)
chr8 (215-268)||(30674330-30674383)
chr8 (215-268)||(34048635-34048688)
chr8 (217-268)||(38843422-38843473)
chr8 (215-268)||(14509907-14509960)
chr8 (215-268)||(5942790-5942843)
[»] chr5 (4 HSPs)
chr5 (215-268)||(35080696-35080749)
chr5 (215-268)||(27530617-27530670)
chr5 (215-264)||(40794254-40794303)
chr5 (215-267)||(2530823-2530875)
[»] scaffold0097 (1 HSPs)
scaffold0097 (215-268)||(39051-39104)
[»] chr6 (2 HSPs)
chr6 (215-268)||(20611914-20611967)
chr6 (215-268)||(2477512-2477565)
[»] chr3 (3 HSPs)
chr3 (215-268)||(52973440-52973493)
chr3 (215-260)||(28689296-28689341)
chr3 (216-260)||(29598175-29598219)
[»] scaffold0902 (1 HSPs)
scaffold0902 (215-254)||(4404-4443)
[»] scaffold0182 (1 HSPs)
scaffold0182 (214-268)||(23927-23981)
[»] scaffold0012 (1 HSPs)
scaffold0012 (215-268)||(182438-182491)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 7e-75; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 23937844 - 23937632
Alignment:
Q  1 gaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacattatgactactaatact 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  23937844 gaagatgaaggtgatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataacctcttcaacattatggctactgatact 23937745  T
Q  101 atggaaggaacatcatctgaaa---acgagggaatggtgttccttgttcatgttgagccaaatttccacacttatgcttaccctatacctatgggaccag 197  Q
    ||| | |||||| |||||||||   | ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23937744 atgaatggaacaacatctgaaaatgaggaggggatagtgtttcttgttcatgttgagccaaattttcacacttatgcataccctatacctatgggaccag 23937645  T
Q  198 ctggtattggtta 210  Q
    ||||| |||||||    
T  23937644 ctggtgttggtta 23937632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 327 - 553
Target Start/End: Complemental strand, 23937610 - 23937387
Alignment:
Q  327 actagaacaatggaatttcgagactaaataaaataaatttcatgactctcttgannnnnnnnccatgtctaattctctcataattgttaaaaatgatgta 426  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||    |        |||||| ||||||||||||| || ||| ||||||||||    
T  23937610 actagaacaatgaaattttgagactgaataaaataaatttcatgactctt---aatttttttccatgtttaattctctcatagttattacaaatgatgta 23937514  T
Q  427 actttgtaaggttggcttttaatattgtccaannnnnnngtgtgatactttgtcctttcaacagctttttatccatcaacacctgaagttggggattctt 526  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23937513 actttgtaaggttggcttttaatattgtccaattttcttgtgtgatactttgtcctttcaacagctttttatccatcaatacctgaagttggggattctt 23937414  T
Q  527 tgaagaaagcccagcaagaaaaatctg 553  Q
    |||||||||||||||||||||||||||    
T  23937413 tgaagaaagcccagcaagaaaaatctg 23937387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 23932121 - 23931955
Alignment:
Q  1 gaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacattatgactactaatact 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||      |||     
T  23932121 gaagatgaaggttatggtggcaatagatgaaagtgatggaagcttttatgcccttaagtgggcccttgataatctcttcaacgttatgac------tacc 23932028  T
Q  101 atggaaggaacatcatctgaaaacgagggaatggtgttccttgttcatgttgagccaaatttccacacttatg 173  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || | |||||||| |||||    
T  23932027 atggaaggaacatcatctgaaaatgagggaatggtgtttcttgttcatgttgaacccattttccacaattatg 23931955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 38547015 - 38546962
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  38547015 ttttattacgggccccttttcacttgcagagccgatcctccaaattcgtaggaa 38546962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 10925933 - 10925880
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||| |||||||    
T  10925933 ttttattacgggcttcttttcacttagagagtcgagcctccaaatttgtaggaa 10925880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 5533446 - 5533496
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtag 265  Q
    |||||||||||| |||||||||||| ||||||| |||||||  ||||||||    
T  5533446 ttttattacgggtctcttttcacttacagagtcaagcctccggattcgtag 5533496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 33170904 - 33170938
Alignment:
Q  234 tcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||||||||| ||||||||||||||    
T  33170904 tcacttgcagagtcgagccttcaaattcgtaggaa 33170938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 23859196 - 23859249
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  23859196 ttttattacaggtctcttttcacttacagagtcgagcctccaaattcgtaggaa 23859249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 7398573 - 7398630
Alignment:
Q  211 ttatttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||  ||||||||||    
T  7398573 ttatttttattacgggtctcttttcacttacagagtcgagcctacagcttcgtaggaa 7398630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 9014158 - 9014111
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcg 262  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||    
T  9014158 ttttattacgggcctcttttcacttatagagtcgagcctccgaattcg 9014111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 23744919 - 23744972
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||| ||||||||||||||||||||  ||||  |||||||||||||||||||||    
T  23744919 tttttttacgggcctcttttcacttatagagctgagcctccaaattcgtaggaa 23744972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 12419474 - 12419421
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||||||||||||||||| || || |||||||||  |||| ||||||    
T  12419474 ttttattacgggcctcttttcacttacaaagccgagcctccggattcataggaa 12419421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 26917710 - 26917661
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgta 264  Q
    ||||||||||| ||||||||||||| ||||||| |||||| | |||||||    
T  26917710 ttttattacggacctcttttcacttacagagtcaagcctctagattcgta 26917661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 16097130 - 16097183
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  16097130 ttttattacgggccacttttcacttacagagccgagcctccaaattcgtaggaa 16097183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 21665681 - 21665628
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| |||||||||||| ||||| ||| |||||| |||||||||||    
T  21665681 ttttattacgggtctcttttcacttacagagccgaccctccagattcgtaggaa 21665628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 22727437 - 22727384
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||  |||||||||||||| ||| ||||||||||| ||||||||||||    
T  22727437 ttttattacttgcctcttttcacttacagcgtcgagcctccgaattcgtaggaa 22727384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 11952569 - 11952516
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| |||||||||||| ||||  ||||||| || |||||||||||    
T  11952569 ttttattacgggtctcttttcacttacagaaccgagccttcagattcgtaggaa 11952516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 12694801 - 12694850
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgta 264  Q
    |||||||||||| |||||||||||| ||||| |||||||||  |||||||    
T  12694801 ttttattacgggtctcttttcacttacagagccgagcctccggattcgta 12694850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 37182766 - 37182819
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| |||||||||||| ||||| |||||||||  |||| ||||||    
T  37182766 ttttattacgggtctcttttcacttacagagccgagcctccggattcttaggaa 37182819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 51691901 - 51691846
Alignment:
Q  213 atttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| |||||||||||||||||||| |||||||||  |||||||||||    
T  51691901 atttttattacgagcctcttttcacttgcagagccgagcctccggattcgtaggaa 51691846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 5893140 - 5893193
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||    
T  5893140 ttttattacggacctcttttcacttacagagccgagcctccaaatttgtaggaa 5893193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 39329371 - 39329318
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||    
T  39329371 ttttattacggacctcttttcacttacagaaccgagcctccaaattcgtaggaa 39329318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 11906881 - 11906828
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||||||||||||||  | || ||||||||| ||||||||||||    
T  11906881 ttttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaa 11906828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 39655232 - 39655179
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||| |||||||||||| | |||||||||||||||| ||| |||||||    
T  39655232 ttttattacgagcctcttttcacctacagagtcgagcctccagatttgtaggaa 39655179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 4167901 - 4167852
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgta 264  Q
    ||||||||||||||||||||||||| || | ||||||||||  |||||||    
T  4167901 ttttattacgggcctcttttcacttacaaaatcgagcctccggattcgta 4167852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 24614082 - 24614131
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgta 264  Q
    ||||||||||||||||||||||||| |||||  || |||||| |||||||    
T  24614082 ttttattacgggcctcttttcacttacagagctgaacctccagattcgta 24614131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 27112157 - 27112210
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| |||||||||||| ||||  |||||||||| ||| |||||||    
T  27112157 ttttattacgggtctcttttcacttacagaaccgagcctccagatttgtaggaa 27112210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 36118438 - 36118385
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||| |||||||||||||| || || ||||| ||| ||||||||||||    
T  36118438 ttttattacgagcctcttttcacttacaaagccgagcttccgaattcgtaggaa 36118385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 37744882 - 37744829
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||| |||||||||||||||| ||  |||||||||||| | ||||||||||||    
T  37744882 ttttaatacgggcctcttttcaattatagagtcgagccttcgaattcgtaggaa 37744829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 30674383 - 30674330
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||| |||||||||||||| ||||| |||||||||| |||||||||||    
T  30674383 ttttattacgagcctcttttcacttacagagccgagcctccagattcgtaggaa 30674330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 34048688 - 34048635
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| || ||||||||| ||||| ||||||||||||||||||||||    
T  34048688 ttttattacgggtctattttcacttacagagccgagcctccaaattcgtaggaa 34048635  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 38843473 - 38843422
Alignment:
Q  217 ttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||| |||||||||||||  |||| ||||||||||||||||||||||    
T  38843473 ttattacggacctcttttcacttagagagccgagcctccaaattcgtaggaa 38843422  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 14509960 - 14509907
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||||||| ||||||||||||||  |||  |||||||||||||||||    
T  14509960 ttttattacgggcctattttcacttgcagaaccgaatctccaaattcgtaggaa 14509907  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 5942790 - 5942843
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||| ||||||||||||| |||| |||||| |||  |||||||||||    
T  5942790 ttttattacggtcctcttttcacttacagaatcgagcttccggattcgtaggaa 5942843  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 35080749 - 35080696
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||| ||||||||||||| |||||||||||||| | |||||||||||    
T  35080749 ttttattacggccctcttttcacttacagagtcgagcctctagattcgtaggaa 35080696  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 27530617 - 27530670
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||||||||||||||  |||  |||||||| |||||||||||||    
T  27530617 ttttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaa 27530670  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 40794303 - 40794254
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgta 264  Q
    |||||||||| |||||||||||||| ||||| ||||||||| ||||||||    
T  40794303 ttttattacgagcctcttttcacttacagagccgagcctccgaattcgta 40794254  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 2530875 - 2530823
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtagga 267  Q
    ||||||||||||||||||||||||| ||||| | | ||| || ||||||||||    
T  2530875 ttttattacgggcctcttttcacttacagagccaaaccttcagattcgtagga 2530823  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 39051 - 39104
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||||| |||||||| |||| |||| ||||||||||| |||||||||||    
T  39051 ttttattacggacctctttttacttacagaatcgagcctccagattcgtaggaa 39104  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 20611914 - 20611967
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||| ||| |||||||||||||||| ||||| ||||||||| ||||||||||||    
T  20611914 tttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaa 20611967  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 2477565 - 2477512
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||| |||||||||||| ||||  |||||||||| ||| |||||||    
T  2477565 ttttattacgggtctcttttcacttacagaaccgagcctccagatttgtaggaa 2477512  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 52973440 - 52973493
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||| |||||||||||| ||| |||| ||||||||| |||||||||||||    
T  52973440 ttttattatgggcctcttttctcttacagaatcgagcctctaaattcgtaggaa 52973493  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 28689341 - 28689296
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaatt 260  Q
    |||||||||| ||||||||||||||| |||| ||| ||||||||||    
T  28689341 ttttattacgagcctcttttcacttggagagccgaacctccaaatt 28689296  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 29598175 - 29598219
Alignment:
Q  216 tttattacgggcctcttttcacttgcagagtcgagcctccaaatt 260  Q
    |||||||||| ||||||||||||| || |||||||||||| ||||    
T  29598175 tttattacggacctcttttcacttacaaagtcgagcctccgaatt 29598219  T

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Target: scaffold0902 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 4443 - 4404
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctc 254  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  4443 ttttattacgggcctctattcacttgcagagccgagcctc 4404  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 23981 - 23927
Alignment:
Q  214 tttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    ||||||||| | ||||||||||||||  |||  ||||||||||||||||||||||    
T  23981 tttttattatgagcctcttttcacttagagaaccgagcctccaaattcgtaggaa 23927  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 182438 - 182491
Alignment:
Q  215 ttttattacgggcctcttttcacttgcagagtcgagcctccaaattcgtaggaa 268  Q
    |||||||||||||||| |||||||| |||   |||||||| |||||||||||||    
T  182438 ttttattacgggcctcatttcactttcagcaccgagcctctaaattcgtaggaa 182491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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