View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8830_low_55 (Length: 201)

Name: NF8830_low_55

Description: NF8830

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8830_low_55

[»] chr7 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 133; E-Value: 2e-69

Query Start/End: Original strand, 10 - 154

Target Start/End: Original strand, 35397063 - 35397207

Alignment:

Q	10	tagattattctcaaagatccaccgactccaatacatacacaattcaaaagaactatcctactccatcataaggattatacttcactctaagctaaatcgc	109	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35397063	tagactattctcaaagacccaccgactccaatacatacacagttcaaaagaactatcctactccatcataaggattatacttcactctaagctaaatcgc	35397162	T

Q	110	tccaactaaaagctttaatatcaattgttggaaaaaacaatagag	154	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35397163	tccaactaaaagctttaatatcaattgttggaaaaaacaatagag	35397207	T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 52 - 96

Target Start/End: Original strand, 34981090 - 34981134

Alignment:

Q	52	ttcaaaagaactatcctactccatcataaggattatacttcactc	96	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|
T	34981090	ttcaaaagaactatcatactccatcataaaaaatatacttcactc	34981134	T

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