View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8830_low_7 (Length: 559)

Name: NF8830_low_7
Description: NF8830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8830_low_7
NF8830_low_7
[»] chr7 (8 HSPs)
chr7 (3-340)||(477865-478202)
chr7 (343-550)||(477623-477830)
chr7 (160-295)||(28195314-28195448)
chr7 (164-240)||(21978934-21979010)
chr7 (9-56)||(28195181-28195228)
chr7 (39-125)||(21979060-21979146)
chr7 (9-125)||(33164410-33164532)
chr7 (29-107)||(34673618-34673696)
[»] chr8 (3 HSPs)
chr8 (9-239)||(37436527-37436763)
chr8 (161-294)||(3372097-3372230)
chr8 (202-273)||(3587132-3587200)
[»] chr1 (5 HSPs)
chr1 (45-286)||(35812105-35812347)
chr1 (26-260)||(12429175-12429407)
chr1 (73-266)||(20990292-20990484)
chr1 (161-265)||(12698908-12699012)
chr1 (205-265)||(8835242-8835300)
[»] scaffold0025 (1 HSPs)
scaffold0025 (9-294)||(36746-37033)
[»] chr5 (2 HSPs)
chr5 (9-294)||(408083-408366)
chr5 (9-95)||(41485205-41485291)
[»] chr2 (4 HSPs)
chr2 (35-134)||(45224838-45224940)
chr2 (9-139)||(13693837-13693967)
chr2 (9-70)||(41454392-41454453)
chr2 (67-123)||(22650312-22650368)
[»] chr3 (2 HSPs)
chr3 (75-139)||(28144874-28144938)
chr3 (57-139)||(28080376-28080454)
[»] chr4 (3 HSPs)
chr4 (9-132)||(16422494-16422617)
chr4 (34-116)||(44203784-44203866)
chr4 (160-294)||(44203591-44203728)
[»] scaffold0215 (1 HSPs)
scaffold0215 (160-294)||(24751-24885)
[»] chr6 (1 HSPs)
chr6 (45-139)||(22717522-22717616)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 340
Target Start/End: Complemental strand, 478202 - 477865
Alignment:
Q  3 tgagcgcttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  478202 tgagcgcttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtga 478103  T
Q  103 ctttctcttgtatattaatatgataatatagtgttatgcatgcatatgagnnnnnnngttgttgtaaccaacactaattttcaaatttttaaactcttat 202  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||       | |||||||||||||||||||||||||||||||||||||||||    
T  478102 ctttctcttgtatattaatatgataatatagtgttatgcgtgcatatgagtttttttgctgttgtaaccaacactaattttcaaatttttaaactcttat 478003  T
Q  203 cgtgatgcttttgttgtaaattgaaggatttagctctcatgttagatattatataacaaaactcaagattttatggatgtacccgtaccttaannnnnnn 302  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           
T  478002 cgtgatgcttttgttgtaaattgaagaatttagctctcatgttagatattatataacaaaactcaagattttatggatgtacccataccttaattttttt 477903  T
Q  303 naaaaattgccatattcttgtaccggtagtcggtaccc 340  Q
     |||||||||||||||||||||||||||||||||||||    
T  477902 taaaaattgccatattcttgtaccggtagtcggtaccc 477865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 343 - 550
Target Start/End: Complemental strand, 477830 - 477623
Alignment:
Q  343 acatagattcggaggtaaataatttatcttttaaagttaaatcataatagggattcttgcatctcgagatccatgtagccgcatccactaagcggatgag 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  477830 acatagattcggaggtaaataatttatcttttaaagttaaatcataatagggattcttgcatctcgagatccatgtagccgcatccactaatcggatgag 477731  T
Q  443 gcttcgttatatatatccaattggtcaaattaatgaaacatcggcaaaaagtgattgcatctctacctttgcttcattggcattctcgcattgtaaattg 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  477730 gcttcgttatatatatccaattggtcaaattaatgaaacatcggcaaaaagtgattgcatctctacctttgcttcattggcattcttgcattgtaaattg 477631  T
Q  543 atgtccat 550  Q
    || |||||    
T  477630 atatccat 477623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 28195314 - 28195448
Alignment:
Q  160 gttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatg-cttttgttgtaaattgaaggatttagctctcatgttagatattatataa 258  Q
    ||||||||||||||| ||||||||| | ||||||||||  ||| ||||||  |||||||| || |||||| |||||| |||||||||  |||||||||||    
T  28195314 gttgttgtaaccaactctaattttcgactttttaaacttctattgtgatgttttttgttgaaagttgaagaatttaggtctcatgtt--atattatataa 28195411  T
Q  259 caaaactcaagattttatggatgtacccgtaccttaa 295  Q
    ||||||||| |||||| | || | ||| |||||||||    
T  28195412 caaaactcatgattttcttgacgcacctgtaccttaa 28195448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 21979010 - 21978934
Alignment:
Q  164 ttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttagctctc 240  Q
    ||||||||||||||| ||||||  |||||||||| ||||| ||||| |||||||||||||||||||||||| |||||    
T  21979010 ttgtaaccaacactagttttcagctttttaaacttttatcatgatgtttttgttgtaaattgaaggatttatctctc 21978934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 28195181 - 28195228
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgt 56  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  28195181 cttgtaaaaaggtgaagtactcgtaccgggtacgcatacggtactcgt 28195228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 21979146 - 21979060
Alignment:
Q  39 tacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatga 125  Q
    |||||||||||||||  ||||||  || ||||||||||||||||| ||||| || ||| |||| ||||||||| | |||||||||||    
T  21979146 tacacatacggtacttttggtactccatttttgctcattattctattgtgagtggaaaatgtggctttctcttatgtattaatatga 21979060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 33164532 - 33164410
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtac------acatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtga 102  Q
    ||||||||  |||||||| ||||||||||||||      || |||||||||||||||||  || ||||||||| |||| || ||||| ||||| || ||     
T  33164532 cttgtaaagtggtgaagtgcccgtaccgggtacgtacggacgtacggtactcgtggtactccatttttgctcaatattgtaatgtgagtgaaatttttgg 33164433  T
Q  103 ctttctcttgtatattaatatga 125  Q
    ||||||||| || || |||||||    
T  33164432 ctttctcttatacatcaatatga 33164410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 34673696 - 34673618
Alignment:
Q  29 ccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttc 107  Q
    ||||||||  ||||| ||||||||||||| |||  || | || |||||||||||| ||||| |||||| ||||||||||    
T  34673696 ccgtaccgaatacacgtacggtactcgtgctactccattatttctcattattctattgtgagtgaaaaatgtgactttc 34673618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 37436763 - 37436527
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaatttt-gctcattattctactgtgaatgaaaattgtgactttc 107  Q
    |||||||||||||||||||||| ||||| | ||| |||  |||||| |||||| ||| |||| ||||||||||||||| ||| ||||||||| |||||||    
T  37436763 cttgtaaaaaggtgaagtacccataccgagaacatatattgtactcatggtacttcattttttgctcattattctactatgagtgaaaattgcgactttc 37436664  T
Q  108 tcttgtatattaatatgataatatagtgttatgcatgcatatgag-----nnnnnnngttgttgtaaccaacactaattttcaaatttttaaactcttat 202  Q
    || ||||||||||||||| |||||| ||||||   ||||||||||             |||||||||||||||||||||||||| ||| |||||| ||||    
T  37436663 tcatgtatattaatatgacaatatattgttatatgtgcatatgagttttttgttgttattgttgtaaccaacactaattttcaactttctaaacttttat 37436564  T
Q  203 cgtgatgcttttgttgtaaattgaaggatttagctct 239  Q
    ||||||| |||||||||||||||||  ||||||||||    
T  37436563 cgtgatgtttttgttgtaaattgaaaaatttagctct 37436527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 3372230 - 3372097
Alignment:
Q  161 ttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttagctc--tcatgttagatattatataa 258  Q
    |||||||||||||| |||| |||| ||||||||||||  ||  |||||  | ||||| | |||||||| ||||| |||  |||||||  ||||| ||| |    
T  3372230 ttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaactccttcatgtt--atattctatga 3372133  T
Q  259 caaaactcaagattttatggatgtacccgtacctta 294  Q
    ||||||| | |||||||| || |||||||| |||||    
T  3372132 caaaacttatgattttattgacgtacccgtccctta 3372097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 3587132 - 3587200
Alignment:
Q  202 tcgtgatgcttttgttgtaaattgaaggatttagctctcatgttagatattatataacaaaactcaagattt 273  Q
    ||||| || ||||||||||| |||||  |||||||||||||||||  ||||||||||||||| ||| |||||    
T  3587132 tcgtgttgtttttgttgtaagttgaaa-atttagctctcatgtta--tattatataacaaaattcatgattt 3587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 45 - 286
Target Start/End: Complemental strand, 35812347 - 35812105
Alignment:
Q  45 tacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatgataatatagtgttatgcatg 144  Q
    ||||||||||||| |||  || ||||||||||||||||| ||||| | ||||||||| || |||||| || |||||||||| ||||||||||| |   ||    
T  35812347 tacggtactcgtgatactccatttttgctcattattctattgtgagtaaaaattgtggctctctcttatagattaatatgacaatatagtgttgtatgtg 35812248  T
Q  145 catatgagnnnnnnn-gttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttag--ctctca 241  Q
    ||| ||||        ||||||||||||||| ||| ||||| | |||||||||| ||||||| ||  |||||||||||||||||| ||| ||  ||||||    
T  35812247 catttgagttttatttgttgttgtaaccaactctagttttcgactttttaaacttttatcgtaatatttttgttgtaaattgaagaattcagctctctca 35812148  T
Q  242 tgttagatattatataacaaaactcaagattttatggatgtaccc 286  Q
    ||||  |||||||||||||||||||| |||||||| || ||||||    
T  35812147 tgtt--atattatataacaaaactcatgattttattgacgtaccc 35812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 12429175 - 12429407
Alignment:
Q  26 tacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatga 125  Q
    ||||| ||| |||||| | ||||||||| |||||||  || ||||||| |||||||||  |||| ||||||||||  ||||||||| |||||  ||||||    
T  12429175 tacccatactgggtacgcgtacggtacttgtggtactccatttttgctaattattctatggtgagtgaaaattgtagctttctcttatatatgcatatga 12429274  T
Q  126 taatatagtgttatgcatgcatatgagnnnnnnngttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattg 225  Q
    |||| |||| ||||   |||||  |||       |||||| ||||||||  |||||||| | |||||||||| ||||||||||| ||||| ||||||| |    
T  12429275 taatgtagtattatatgtgcat--gagtttttttgttgttataaccaactttaattttcgactttttaaacttttatcgtgatgtttttgatgtaaatag 12429372  T
Q  226 aaggatttag--ctctcatgttagatattatataaca 260  Q
    ||| ||||||  ||||||||||  |||||||||||||    
T  12429373 aagaatttagccctctcatgtt--atattatataaca 12429407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 266
Target Start/End: Complemental strand, 20990484 - 20990292
Alignment:
Q  73 tcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatgataatatagtgtt-atgcatgcatatgagnnnnnnngttgttgtaacc 171  Q
    ||||| ||||| ||||  ||||||||||| |||||| || |||||||||||||||||||||| || |||  |||||  |||       ||||||| ||||    
T  20990484 tcatttttctattgtgggtgaaaattgtggctttcttttatatattaatatgataatatagtatttatgtgtgcat--gagtttttttgttgttgaaacc 20990387  T
Q  172 aacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttagc--tctcatgttagatattatataacaaaactc 266  Q
    ||| || |||||||| |||||||| | ||||  ||||| |||||||||||||||||| |||||||  |||||||||  |||||||||||||||||||    
T  20990386 aactctgattttcaactttttaaaattttattatgatggttttgttgtaaattgaagaatttagctttctcatgtt--atattatataacaaaactc 20990292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 12698908 - 12699012
Alignment:
Q  161 ttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttag--ctctcatgttagatattatataa 258  Q
    |||||||| ||||| ||||||||  | |||||||||| ||||| || || |||| | ||||||||||| | ||||  ||||||||||  |||||||||||    
T  12698908 ttgttgtatccaactctaatttttgagtttttaaacttttatcttgctgtttttatcgtaaattgaagaacttagctctctcatgtt--atattatataa 12699005  T
Q  259 caaaact 265  Q
    |||||||    
T  12699006 caaaact 12699012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 8835300 - 8835242
Alignment:
Q  205 tgatgcttttgttgtaaattgaaggatttagctctcatgttagatattatataacaaaact 265  Q
    ||||| |||||||||||||||||   |||||||||||||||  |||||||||||| |||||    
T  8835300 tgatgtttttgttgtaaattgaacattttagctctcatgtt--atattatataactaaact 8835242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 36746 - 37033
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacaca----tacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgact 104  Q
    ||||||||| ||||||||||| ||||||||||| ||    || ||||||||||||||  || ||||||||| |||| || ||||| || || ||||| ||    
T  36746 cttgtaaaacggtgaagtacctgtaccgggtactcacccgtatggtactcgtggtactccagttttgctcaatattgtattgtgagtggaatttgtggct 36845  T
Q  105 ttctcttgtatattaatatgataatatagtgttatgcatgcatatgagnnnnnnngttgttgtaaccaacactaattttcaaatttttaaactcttatcg 204  Q
    ||||| | || ||||||||||||||||| ||||||   ||| | ||||       |||||||||||||   |||| |||||| |||||||||| |||  |    
T  36846 ttctcctatacattaatatgataatataatgttatttgtgcgtttgagtttctttgttgttgtaacca--tctaaatttcaactttttaaactattaatg 36943  T
Q  205 tgatgcttttgttgtaaattgaaggatttagctc--tcatgttagatattatataacaaaactcaagattttatggatgtacccgtacctta 294  Q
    ||||  ||||||||| |||||||| ||||| |||  |||||||  ||||| |||||||||||| | |||||||| || ||| ||||||||||    
T  36944 tgattattttgttgtgaattgaagaatttaactctttcatgtt--atattctataacaaaacttatgattttattgacgtatccgtacctta 37033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 408083 - 408366
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttct 108  Q
    ||||||||| ||||||||||| |||| |||||| | |||||||||||||||||  || |||||||||||||| || ||||| ||||| ||||| ||||||    
T  408083 cttgtaaaacggtgaagtaccggtactgggtacgcgtacggtactcgtggtactccatttttgctcattattgtattgtgagtgaaatttgtggctttct 408182  T
Q  109 cttgtatattaatatgataatatagtgttatgcatgcatatgagnnnnnnngttgttgtaaccaacactaattttcaaatttttaaac-tcttatcgtga 207  Q
    ||| || |||||||  | |||||| | ||||   ||| | ||||       |||||||||||| || |||| |||  | ||||||||| ||| || ||||    
T  408183 cttatacattaata--acaatatactattatttgtgcgtttgagtttctttgttgttgtaaccgactctaaatttggactttttaaacttctgat-gtga 408279  T
Q  208 tgcttttgttgtaaattgaaggattta--gctctcatgttagatattatataacaaaactcaagattttatggatgtacccgtacctta 294  Q
    |  ||||||||| |||||||| |||||   || |||||||  ||||| |||||||||||| | |||||||| || ||||||||||||||    
T  408280 tttttttgttgtgaattgaagaatttaattctttcatgtt--atattctataacaaaacttatgattttattgacgtacccgtacctta 408366  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 41485291 - 41485205
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaa 95  Q
    ||||||||| | ||||||||||||||||||||| | ||||||| | |||| || |||||||| ||||||||| |||| |||||||||    
T  41485291 cttgtaaaatgatgaagtacccgtaccgggtacgcgtacggtattggtggcacttcaattttcctcattattgtactctgaatgaaa 41485205  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 45224838 - 45224940
Alignment:
Q  35 cgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatat---taatatgataatat 131  Q
    ||||||||| |||||||||||||||||  || |||||||||||||| || ||||| ||||| ||||| ||||||||| |||||   ||||||||||||||    
T  45224838 cgggtacacgtacggtactcgtggtactccatttttgctcattattgtattgtgagtgaaatttgtggctttctcttatatattaataatatgataatat 45224937  T
Q  132 agt 134  Q
    |||    
T  45224938 agt 45224940  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 13693967 - 13693837
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttct 108  Q
    ||||||||| ||||||||||||||| |||||||  ||||||||||| || |||   | ||||| |||||||  || ||||| ||||| || || ||||||    
T  13693967 cttgtaaaacggtgaagtacccgtatcgggtacggatacggtactcttgatactctatttttgttcattatattattgtgagtgaaatttatggctttct 13693868  T
Q  109 cttgtatattaatatgataatatagtgttat 139  Q
    | | || ||||||| || |||||| ||||||    
T  13693867 cctatacattaataggacaatataatgttat 13693837  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 41454392 - 41454453
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaatttt 70  Q
    ||||||||| | ||||||||||||| ||||||| | ||||||||||||||||| ||| ||||    
T  41454392 cttgtaaaacgatgaagtacccgtatcgggtacgcgtacggtactcgtggtacttcattttt 41454453  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 22650368 - 22650312
Alignment:
Q  67 ttttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatat 123  Q
    ||||||||||||||||| | ||| |||||||||||| ||||| || |||||||||||    
T  22650368 ttttgctcattattctattatgagtgaaaattgtgattttcttttatatattaatat 22650312  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 28144874 - 28144938
Alignment:
Q  75 attattctactgtgaatgaaaattgtgactttctcttgtatattaatatgataatatagtgttat 139  Q
    ||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  28144874 attattctattgtgattgaaaattgtgactttctcttatttattaatatgataatatagtattat 28144938  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 28080376 - 28080454
Alignment:
Q  57 ggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatgataatatagtgttat 139  Q
    ||||| ||| ||||| ||||||||||| ||||| ||||||||||||||||||||| |||    ||||||||||||||| ||||    
T  28080376 ggtacttcatttttgttcattattctattgtgagtgaaaattgtgactttctcttatat----atatgataatatagttttat 28080454  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 16422617 - 16422494
Alignment:
Q  9 cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttct 108  Q
    ||||||||| | ||||||||||||| ||| ||| | ||| ||||||||||||| ||| |||| ||||||||| || ||||| ||||| || |||| ||||    
T  16422617 cttgtaaaacgatgaagtacccgtatcggatacgcgtacagtactcgtggtacttcattttttctcattattgtattgtgagtgaaatttatgacattct 16422518  T
Q  109 cttgtatattaatatgataatata 132  Q
    ||| || | |||||||| ||||||    
T  16422517 cttatacactaatatgacaatata 16422494  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 44203866 - 44203784
Alignment:
Q  34 ccgggtacacatacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtata 116  Q
    |||||||| | ||||||||||||| |||  || |||||||||||||| |||||||| ||||| ||||| ||| ||||||||||    
T  44203866 ccgggtacgcgtacggtactcgtgctactccatttttgctcattattgtactgtgagtgaaatttgtggcttactcttgtata 44203784  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 44203728 - 44203591
Alignment:
Q  160 gttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttagctct--catgttaga-tattatat 256  Q
    ||||||||||||||| |||| |||||| ||||| || | |||| ||| || ||||||||| | |||||| ||||| ||||  ||||||| | |||  |||    
T  44203728 gttgttgtaaccaactctaaatttcaacttttttaatttttattgtgctgtttttgttgtcagttgaagaatttatctcttccatgttatattatagtat 44203629  T
Q  257 aacaaaactcaagattttatggatgtacccgtacctta 294  Q
    ||||||||| | |||||||| || ||| ||||||||||    
T  44203628 aacaaaacttatgattttattgacgtatccgtacctta 44203591  T

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Target: scaffold0215 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 24885 - 24751
Alignment:
Q  160 gttgttgtaaccaacactaattttcaaatttttaaactcttatcgtgatgcttttgttgtaaattgaaggatttagctc--tcatgttagatattatata 257  Q
    ||||||||||||||| |||| |||| ||||||||||||  ||  |||||  | ||||| | |||||||| ||||| |||  |||||||  ||||| |||     
T  24885 gttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaactccttcatgtt--atattctatg 24788  T
Q  258 acaaaactcaagattttatggatgtacccgtacctta 294  Q
    |||||||| | |||||||| || |||||||| |||||    
T  24787 acaaaacttatgattttattgacgtacccgtccctta 24751  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 22717616 - 22717522
Alignment:
Q  45 tacggtactcgtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatgataatatagtgttat 139  Q
    ||||||||||||| |||   | |||| |||| ||||||| |||| ||||||||||||| |||||||| |||||| || |||| | ||||| ||||    
T  22717616 tacggtactcgtgataccctatttttcctcagtattctattgtggatgaaaattgtgattttctcttatatattgatttgatgacatagtattat 22717522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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