View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_high_10 (Length: 281)
Name: NF8831_high_10
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 20340506 - 20340760
Alignment:
| Q |
12 |
tcatcatcattccaatggacagagacataaaagggaaaatggtccctatctcagcattcaggtataatttctatctttaatgtgtatatgtcctaggata |
111 |
Q |
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| T |
20340506 |
tcatcatcattccaatggacagagacataaaagggaaaatggtccctatctcagcattcaggtataatttctatctttaatgtgtatatgtcctaggata |
20340605 |
T |
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| Q |
112 |
gaacctgaaatcatcctctgatacattctaagccacatctacacatgatacaaaaccaaattttggaaaagaaaatgctattatttatttatgaaccccc |
211 |
Q |
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| T |
20340606 |
gaacctgaaatcatcctctgatacattctaagccacatctacacatgatacaaaaccaaattttggaaaagaaaatgctattatttatttatgaaccccc |
20340705 |
T |
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| Q |
212 |
atcatgtctgagcagttttgtactccgaaaattcaaaccaaaacaatgcatgtgt |
266 |
Q |
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| T |
20340706 |
atcatgtctgagcagttttgtactccgaaaattcaaaccaaaacaatgcatgtgt |
20340760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 20346032 - 20346093
Alignment:
| Q |
194 |
atttatttatgaacccccatcatgtctgagcag-ttttgtactccgaaaattcaaaccaaaa |
254 |
Q |
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| T |
20346032 |
atttatttataaacccccaccatttctgagcagtttttgtactcctacaattcaaaccaaaa |
20346093 |
T |
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