View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_high_15 (Length: 205)
Name: NF8831_high_15
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_high_15 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 205576 - 205758
Alignment:
| Q |
12 |
gatggacatcacctaaaatcgaagagaaatagacaaatgnnnnnnnnnnnnnntaccctctgagaactcggagcttctgcgaaaaggtagtacaagattc |
111 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
205576 |
gatgaacaacacctaaaatcgaagagaaatagacaaatgaaaaataaaaaaaataccatctgagaactcggagcttctgcgaaaaggaagtacaagattc |
205675 |
T |
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| Q |
112 |
tgatcgaacatgataggagattgagtaggagaatggactagacttccggtggaaagtgcacgttggtgttggttcttgatgtc |
194 |
Q |
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| T |
205676 |
tgatcgaacatgttaggagattgagtaggagaatggactagacttccggtggaaagtgcacgttggtgttggttcttgatgtc |
205758 |
T |
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Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 14611801 - 14611619
Alignment:
| Q |
12 |
gatggacatcacctaaaatcgaagagaaatagacaaatgnnnnnnnnnnnnnntaccctctgagaactcggagcttctgcgaaaaggtagtacaagattc |
111 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14611801 |
gatgaacaacacctaaaatcgaagagaaatagacaaatgaaaaataaaaaaaataccatctgagaactcggagcttctgcgaaaaggaagtacaagattc |
14611702 |
T |
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| Q |
112 |
tgatcgaacatgataggagattgagtaggagaatggactagacttccggtggaaagtgcacgttggtgttggttcttgatgtc |
194 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14611701 |
tgatcgaacatgttaggagattgagtaggagaatggactagacttccggtggaaagtgcacgttggtgttggttcttgatgtc |
14611619 |
T |
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