View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_high_3 (Length: 351)
Name: NF8831_high_3
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 55174788 - 55175122
Alignment:
| Q |
1 |
tgtgctaccttggtcaatgcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaacaatgttgctcagatttcagccgagttggaaa |
100 |
Q |
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| T |
55174788 |
tgtgctaccttggtcaatgcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaacgatgtttctcagatttcagccgagttggaaa |
55174887 |
T |
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| Q |
101 |
gggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatctttttt |
200 |
Q |
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| T |
55174888 |
gggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaacaccgaaactcaagtaacattatctttttt |
55174987 |
T |
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| Q |
201 |
atttgtactttgcttaaataagtgttgacttgtttatattcaataaaagctgacatctagagtgaaagaatgacacagttttatgcagaaagtgaacctt |
300 |
Q |
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| T |
55174988 |
atttgtactttgcttaaataagtgttgacttgtttatattcaataaaagctgacatctagagtgaaagaatgacacagttttatgcagaaagtgaacctt |
55175087 |
T |
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| Q |
301 |
tgagattcatgtaatcgtagtaatcacatatatct |
335 |
Q |
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| T |
55175088 |
tgagattcatgtaatcgtagtaatcacatatatct |
55175122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 55178544 - 55178669
Alignment:
| Q |
72 |
tgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaac |
171 |
Q |
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| T |
55178544 |
tgttgctgagatttcattggagttggaaagggaaaggctgaaaaatgcggagctcatggaaaaaatatcaatgcacgaagctcagataagggaaagaaac |
55178643 |
T |
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| Q |
172 |
accgaaactcaagtaacattatcttttt |
199 |
Q |
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| T |
55178644 |
accgaaactc--gtaacattatcttttt |
55178669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 50906734 - 50906856
Alignment:
| Q |
28 |
ttttgtgatatagaacaagaagtgaatggagataat-gtcaacaatgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctc |
126 |
Q |
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| T |
50906734 |
ttttgtgacatagaataagaagcgaatggagataattgtcaacgttgttgctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatc |
50906833 |
T |
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| Q |
127 |
atggaaaaaatatctatgctcgaa |
150 |
Q |
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| T |
50906834 |
atgg-aaaaatatcgatgctcgaa |
50906856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 50906872 - 50907024
Alignment:
| Q |
189 |
attatcttttttatttgtactttgcttaaataagtgttgacttgttt-atattcaataaaagctgacatctagagtgaaagaatgaca-----cagtttt |
282 |
Q |
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| T |
50906872 |
attatctttcttattcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgacaactttatgcttt |
50906971 |
T |
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| Q |
283 |
atgcagaaagtgaacctttgagattcatgtaatcgtagtaatcacatatatct |
335 |
Q |
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| T |
50906972 |
atgcacaaactgaacctttgagattcgtatagttgaagtaatcacagatatct |
50907024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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